Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 440 a.a., porin from Pseudomonas simiae WCS417

 Score =  266 bits (680), Expect = 9e-76
 Identities = 160/443 (36%), Positives = 249/443 (56%), Gaps = 34/443 (7%)

Query: 4   MKWSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREE 63
           + ++ + LA++A    LA A+    + GF+E + L++ TR  Y +RD R+     S+  E
Sbjct: 5   LTFTPLFLAIAATIVPLAHAADSTPADGFVEGAHLNINTRNYYMNRDRRDIHTDDSK--E 62

Query: 64  TGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTGS-DGRSQDDYSKG 122
            G GF+G FESG+TQGTVG G+DA  MLGLKLD G G  G+ + P GS +G++   +S  
Sbjct: 63  WGQGFLGIFESGYTQGTVGFGLDAHAMLGLKLDGGGGTDGSSILPYGSGNGKAPGSFSTA 122

Query: 123 GGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGH--FT 180
           GG +K R  DT LK GD F   PV A   +R+LP+  +G  +T++ ++G     G   FT
Sbjct: 123 GGTLKMRAFDTELKAGDLFLNNPVIAGGATRMLPQTFRGVSLTNHSLDGWMFEGGQASFT 182

Query: 181 SLTAQEQTNR--DSFGL-------KEANVVGGTYAFTDNLSTSLYYSKVEDYWRKYYANV 231
            L  Q    R   S+G        +  N  G +++  D L+++LY ++++D W +YY ++
Sbjct: 183 KLYNQSGHRRIGTSYGALPEHTDSQHMNWAGVSFSGIDGLTSNLYAAELKDVWNQYYYDL 242

Query: 232 NWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQ 291
           ++   +++   L    + Y T+  G    ++  GD +DN  +SL    ++G H+ T AYQ
Sbjct: 243 DYTYVVNEMISLNPGLHYYHTQDTG----QSLLGD-IDNNTYSLHFTVDVGHHSVTAAYQ 297

Query: 292 KVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYV 351
           +V G+  + Y I  G +++L NS   SDFN  +E+SW+ +Y  NF   G+PGLT    Y+
Sbjct: 298 RVNGNTPFDY-IAQGDSVYLDNSQQYSDFNGPNERSWKLKYAYNFGGLGLPGLTSAVSYI 356

Query: 352 RGS------DANVAGTS--------NGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSS 397
            G       D    G S        + K WERD+D+KYV+Q G AKDL+ R++ AT R S
Sbjct: 357 SGKTDLTKVDPQSRGYSAWYSADGKDAKHWERDIDLKYVVQGGKAKDLAVRLQWATNRGS 416

Query: 398 DGVYYDSPSIDELRLIVEYPLSI 420
           +G       +DE R+IV+YP+++
Sbjct: 417 NGYSAVDRDVDEYRVIVDYPINV 439