Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 454 a.a., porin from Pseudomonas simiae WCS417

 Score =  243 bits (619), Expect = 1e-68
 Identities = 164/463 (35%), Positives = 239/463 (51%), Gaps = 54/463 (11%)

Query: 4   MKWSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREE 63
           MK S +ALAV+ G       + Q  + GF+EDSK ++  R  Y + D RN  G  ++ EE
Sbjct: 1   MKKSTLALAVALGA-----IAQQAGAAGFVEDSKATLGLRNFYINTDNRNGTGA-NKNEE 54

Query: 64  TGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTG-------------LFPTG 110
            G GF   F SG+TQGTVG GVDAIG+LG++LDSG G  G               +FP+ 
Sbjct: 55  WGQGFDLRFISGYTQGTVGFGVDAIGLLGVRLDSGGGTNGATKPSGANPGSYGGTIFPSE 114

Query: 111 SDGRSQDDYSKGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIE 170
            +G++ +DYS  G   K +IS T LK+G     LPV  T+D RLLP+  QG  IT+N+I+
Sbjct: 115 HNGKAVNDYSSLGLTAKAKISQTELKLGTLQPKLPVIITNDGRLLPQTFQGGQITTNDIK 174

Query: 171 GLTLHAGHFTSLTAQEQTNRDSFGLKEAN-------------VVGGTYAFTDNLSTSLYY 217
            LTL  G       +  ++ ++  L  AN               GG Y  T +L+   YY
Sbjct: 175 DLTLVGGQIEKAKGRNSSSNENLSLSGANSRGATWRDSNKFIYAGGDYKITKDLTAQYYY 234

Query: 218 SKVEDYWRKYYANV--NWALPISDNQGLVFDFNIYDTKSEG-------SAEYRAFDG--D 266
             +ED++++++  +  NWA+     +  +  FN  D  + G       +  Y+ F     
Sbjct: 235 GNLEDFYKQHFLGLTHNWAIGPGVLKSDLRYFNSSDDGANGNESAYFTTGNYQGFRAGKG 294

Query: 267 KLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDG-GGTIFLANSVARSDFNAEDE 325
           K+DN  +S    Y +  HTF   YQ   G  D+ +   G G + +L   +    F    E
Sbjct: 295 KVDNNLYSGLFLYTVAGHTFGGGYQVSNGSSDFPWLNQGDGSSAYLTTDMQIQKFARAGE 354

Query: 326 KSWQARYDLNFAEYGIPGLTFMTRYVRGSDAN-VAGTS-----NGK-EWERDVDIKYVLQ 378
           ++WQARY  +FA+ G+PGLT    Y++GSD + VA T+     NG+ EWERD+ + YV+ 
Sbjct: 355 RTWQARYAYDFAKVGVPGLTAGVVYLKGSDIDTVANTASRTQFNGQSEWERDITVAYVIP 414

Query: 379 EGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSIL 421
           EGP K+L    + A +R+      D    DE RLIV Y + +L
Sbjct: 415 EGPLKNLGVAWKNAMWRTDIAGARDQ---DENRLIVSYSIPLL 454