Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 432 a.a., porin from Pseudomonas simiae WCS417

 Score =  639 bits (1648), Expect = 0.0
 Identities = 317/432 (73%), Positives = 355/432 (82%), Gaps = 11/432 (2%)

Query: 1   MRVMKWSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGG--- 57
           MRVMKWSMIALAVSAGT+Q AMASAQ +SKGF+EDS  S+ TR LYFSRDFRNN  G   
Sbjct: 1   MRVMKWSMIALAVSAGTTQFAMASAQSDSKGFVEDSTFSINTRALYFSRDFRNNPSGPGS 60

Query: 58  QSRREETGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQD 117
           QSR EETGLGF   ++SGFTQGT+GVGVD IG+LG+KLDSGKGRAGTGLFPTGSDGRSQD
Sbjct: 61  QSRAEETGLGFNALYQSGFTQGTIGVGVDVIGLLGVKLDSGKGRAGTGLFPTGSDGRSQD 120

Query: 118 DYSKGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAG 177
           DYSKGGGAVKFRISDTVLKVGDQ+T  PVFA+DDSRLLPE+ QG  ITSNEI+GL L  G
Sbjct: 121 DYSKGGGAVKFRISDTVLKVGDQYTTAPVFASDDSRLLPELPQGISITSNEIKGLKLEGG 180

Query: 178 HFTSLTAQEQTNRDSFGLKEANVVGGTYAFTDNLSTSLYYSKVEDYWRKYYANVNWALPI 237
           HFTS  AQ QT  DS GL + + VGG Y+FT   + SLYY+K EDY+RKYY+N+NW   +
Sbjct: 181 HFTSSVAQNQTYHDSLGLTKTDFVGGVYSFTPEFTGSLYYAKTEDYFRKYYSNLNWTHAL 240

Query: 238 SDNQGLVFDFNIYDTKSEGSAEYRAF--------DGDKLDNRAFSLSGAYNIGAHTFTLA 289
           SD+Q    DFNIYDTKS+G    RA+        +  KLDNRAFSL GAY IGAHTFTLA
Sbjct: 241 SDDQSFALDFNIYDTKSDGEGLQRAYKDNGLPFAERTKLDNRAFSLQGAYTIGAHTFTLA 300

Query: 290 YQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTR 349
            QKVTGDGDYGYG+DGGGT+FLANS+ARSDFNAE EKS+QARYD+N A +GIPGL+FMTR
Sbjct: 301 AQKVTGDGDYGYGVDGGGTVFLANSIARSDFNAEGEKSYQARYDINMATFGIPGLSFMTR 360

Query: 350 YVRGSDANVAGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDE 409
           YV GS AN A TSNGKEWERD++ KYV+Q GPAKDLS R+RQATYRSSDGVYY S SIDE
Sbjct: 361 YVTGSGANTATTSNGKEWERDIEAKYVIQSGPAKDLSLRIRQATYRSSDGVYYGSSSIDE 420

Query: 410 LRLIVEYPLSIL 421
           LRLI  YPL+IL
Sbjct: 421 LRLIANYPLNIL 432