Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 420 a.a., porin from Pseudomonas simiae WCS417

 Score =  259 bits (661), Expect = 1e-73
 Identities = 153/406 (37%), Positives = 226/406 (55%), Gaps = 26/406 (6%)

Query: 28  ESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGLGFVGTFESGFTQGTVGVGVDA 87
           ++ GFIED+K ++  R  YF+R+F N    Q + EE    F+   +SG+T GTVG G+D 
Sbjct: 29  QADGFIEDAKATLNLRNAYFNRNFTNPTNPQGKAEEWTQNFILDAKSGYTTGTVGFGIDV 88

Query: 88  IGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRISDTVLKVGDQFTALPVF 147
           +G+   KLD GKG  GT L P  SDGR  D++ + G A+K ++S T LKVG+    LP+ 
Sbjct: 89  LGLYSQKLDGGKGTGGTQLLPIHSDGRPADNFGRLGVALKTKLSKTELKVGEWMPVLPIL 148

Query: 148 ATDDSRLLPEIAQGTLITSNEIEGLTLHAGHF--------TSLTAQEQTNRDSFGLKEAN 199
            +DD R LP+  +G  +TSNEI GLTL+ G F         S+       + +F     N
Sbjct: 149 RSDDGRSLPQTFRGGQVTSNEIAGLTLYGGQFRGNSPRNDASMEDMFMNGKAAFTSDRFN 208

Query: 200 VVGGTYAFTD-NLSTSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIYDTKSEGSA 258
             GG Y+F D      ++Y+++ D +++ Y N+  + P+ D   L  +   +  K +GS 
Sbjct: 209 FGGGEYSFNDKRTQVGVWYAELSDIYQQQYFNLTHSQPVGD-WTLGANLGFFTGKEDGS- 266

Query: 259 EYRAFDGDKLDNRAFS-LSGAYNIGAHTFTLAYQKVTGDGDYGYGIDG--GGTIFLANSV 315
              A  GD  +  AF+ LS  YN   +TF +  QK+TGD  +   ++G  GGT  LAN  
Sbjct: 267 ---ALAGDLDNKTAFALLSAKYN--GNTFYVGLQKLTGDSVW-MRVNGTSGGT--LANDS 318

Query: 316 ARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDANVAGTSNGKEWERDVDIKY 375
             + ++   EKSWQ R+D NF   GIPGLT M RY+ GS+ +    ++GKEW R+ ++ Y
Sbjct: 319 YNASYDNAKEKSWQVRHDFNFVVLGIPGLTLMNRYISGSNVHTGAITDGKEWGRESELAY 378

Query: 376 VLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSIL 421
            +Q G  KDL+ R R +T R      + +   DE RL + YP+S+L
Sbjct: 379 TVQSGALKDLNVRWRNSTMRRD----FSNNEFDENRLFISYPISLL 420