Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 439 a.a., porin from Pseudomonas simiae WCS417

 Score =  228 bits (582), Expect = 2e-64
 Identities = 143/447 (31%), Positives = 228/447 (51%), Gaps = 37/447 (8%)

Query: 4   MKWSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREE 63
           MK ++  L+V  G+  L +A +   S  F+ DSK ++  R  YF+ D R+     S+ EE
Sbjct: 1   MKATLNVLSVLTGS--LGVALSPLASADFLSDSKANLSMRNFYFNNDNRDGTAAPSKTEE 58

Query: 64  TGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGR-AGTGLFPTGSDGRSQDDYSKG 122
            G  F+  ++SGFT GTVG G+DAIGMLG+ LDSG GR  G+ + P   DG++ D++++G
Sbjct: 59  WGQAFILNYQSGFTDGTVGFGLDAIGMLGITLDSGAGRHVGSSMIP-NDDGKATDNWARG 117

Query: 123 GGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSL 182
           G   K R + + L+ G     LP+  ++D RLLP+   G  ITS +I+ LTL  G     
Sbjct: 118 GATAKARFAKSELRYGYLRPNLPILVSNDGRLLPQSFDGGQITSKDIDNLTLIGGQLQHT 177

Query: 183 TAQEQTNRDSF----GLKEANV---VGGTYAFTDNLSTSLYYSKVEDYWRKYYANVNWAL 235
           T +  ++R       G +E+N     G  Y  T +L    YY+ +EDY+++++A +   L
Sbjct: 178 TGRGSSDRSGLAVAGGTQESNTFNYAGADYQVTKDLMLQYYYANLEDYYQQHFAGLIHVL 237

Query: 236 PISDNQGLVFDFNIYDTKSEGS-------------AEYRAFDGDKLDNRAFSLSGAYNIG 282
           P+ D   L  D   + T S+G                Y      ++DN  +S +  Y++G
Sbjct: 238 PLGDYGSLKTDLRYFKTTSDGKNSSVAGRAEGYKLGGYTKNGTGEIDNNTWSAAFIYSLG 297

Query: 283 AHTFTLAYQKVTGDGDYGY----GI----DGGGTIFLANSVARSDFNAEDEKSWQARYDL 334
            H  T  YQ+V+ D ++      G+    +GG +++L        F    E++  A+Y  
Sbjct: 298 PHAITAGYQQVSDDSNFAQLNQGGLVNKGEGGSSLYLYTDRTVQTFIQAGERTAFAQYAY 357

Query: 335 NFAEYGIPGLTFMTRYVRGSDANVAGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATY 394
           +FA  G+PGL     Y++G     A  ++  EWERD+ + YV+Q G  K++ F  R    
Sbjct: 358 DFASLGVPGLKASVMYLKGDHILTASGNDASEWERDISLDYVVQSGTFKNVGFGWRNGVS 417

Query: 395 RSSDGVYYDSPSIDELRLIVEYPLSIL 421
           RS   V  D    D+ R+ V Y + ++
Sbjct: 418 RSE--VARDQ---DQNRVFVNYSIPLM 439