Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 438 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  360 bits (923), Expect = e-104
 Identities = 206/444 (46%), Positives = 275/444 (61%), Gaps = 31/444 (6%)

Query: 1   MRVMKWSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSR 60
           M   + S+IAL + + ++  AMA+ QD+SKGFIEDS L++  R  Y SRD++N   G+  
Sbjct: 1   MLKQRMSLIALGILSAST--AMANDQDQSKGFIEDSHLNIAARNAYISRDYKN---GKQD 55

Query: 61  REETGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLF-----------PT 109
           + E G GF+G  ESGFTQGTVGVGVD IG   ++LD GKGRAG G             P 
Sbjct: 56  KAEWGQGFIGKLESGFTQGTVGVGVDVIGQYAIRLDGGKGRAGAGGIDFFKQGNGTTNPD 115

Query: 110 GSD--GRSQDDYSKGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSN 167
           GS+  G +  D +KGG AVKFR+S+TVLK GDQF A+PV   D+SRLL E   GT I S 
Sbjct: 116 GSNNPGSAPHDLAKGGAAVKFRVSNTVLKYGDQFPAVPVLQYDNSRLLSETYTGTSIVSK 175

Query: 168 EIEGLTLHAGHFTSLTAQEQTNRDSFGLKEANVVGGTYAFTDNLSTSLYYSKVEDYWRKY 227
           EI GL L AGHFT    +     DS  LK  + +GG+Y FT++LS +LY S ++D  +K 
Sbjct: 176 EIAGLQLDAGHFTKEARKSMEGTDSGRLKSIDYIGGSYKFTESLSAALYASDMQDVLKKQ 235

Query: 228 YANVNWALPISDNQGLVFDFNIYDTKSEGS-AEYRAFDGDKLDNRAFSLSGAYNIGAHTF 286
           Y NVN+ L + + Q L FDFN Y TK + S A     D D  DN+ +SL   + +G H+F
Sbjct: 236 YVNVNYVLALPEKQSLTFDFNGYKTKLDRSFALENQKDADARDNKIWSLGATWAVGPHSF 295

Query: 287 TLAYQKVTGDGDYGYG--------IDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAE 338
           T+A+Q+ TGD  Y YG         DGG TI LANS   SDFN +DE+SWQ  Y ++FA 
Sbjct: 296 TVAHQRSTGDTGYLYGGYRNAGGIGDGGNTILLANSY-WSDFNGKDERSWQLGYGIDFAT 354

Query: 339 YGIPGLTFMTRYVRGSDANVAGTSNGKEWERDV--DIKYVLQEGPAKDLSFRVRQATYRS 396
           +G+PGLT+   YVRG++ +  GT+ G   ER++    KYV+Q GPAKDLS R R +  R 
Sbjct: 355 FGVPGLTYNVAYVRGTNID-DGTNRGDGTEREIWNQFKYVVQSGPAKDLSLRARASWLRV 413

Query: 397 SDGVYYDSPSIDELRLIVEYPLSI 420
           S+     +   +E+RL  +YP+++
Sbjct: 414 SNNADQYNVGGNEIRLFADYPINV 437