Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 430 a.a., porin from Pseudomonas simiae WCS417

 Score =  285 bits (730), Expect = 1e-81
 Identities = 162/433 (37%), Positives = 246/433 (56%), Gaps = 33/433 (7%)

Query: 2   RVMKWSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQ-SR 60
           R+ + ++ + A  AG S L+ A+       F EDS  +++TR +YF+RDFR+    Q S+
Sbjct: 16  RLTQTALASAATLAGFSPLSQAA-------FFEDSSATLETRNMYFNRDFRDGTSAQQSK 68

Query: 61  REETGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYS 120
           R+E   GF+   +SG+T GTVG GVDA+GMLG+KLDS   R GTGL PT  DGR+ D+YS
Sbjct: 69  RDEWAQGFMLNLQSGYTDGTVGFGVDALGMLGVKLDSSPDRTGTGLLPTHDDGRAADEYS 128

Query: 121 KGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFT 180
           K G   K +IS T LK+G     LP+   +D R+LP+   G LITS E + L    G   
Sbjct: 129 KLGLTGKVKISATELKIGSLIPELPILKPNDGRILPQTFNGGLITSKEFKNLVFTGGRLD 188

Query: 181 SLTAQEQTNRDSFGL-------------KEANVVGGTYAFTDNLSTSLYYSKVEDYWRKY 227
               ++ TN +   L             K  N  G  Y F D ++ S ++++++D +R++
Sbjct: 189 KAKDRDDTNYEDIALNNKNSRFVSGATGKHFNFGGADYQFADKITGSYHFAQLDDVYRQH 248

Query: 228 YANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFT 287
           +  +  + P+        D  +  +   G+A      G K+DN + +   +Y +  H  +
Sbjct: 249 FLGLVASRPMGPGT-FGTDLRLAISDDTGAAR-----GGKIDNTSLNGLFSYALNGHKLS 302

Query: 288 LAYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFM 347
             YQ ++GD  + Y +DG    +L N V  +DF   +E+SWQARYD +FA+ GIPGL+FM
Sbjct: 303 AGYQHMSGDSAFPY-VDGSDP-YLVNFVQINDFAGAEERSWQARYDFDFAKLGIPGLSFM 360

Query: 348 TRYVRGSDANVAGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSI 407
           +RY+ G +  +     GKEWER+ +IKYV+Q G  KD++ R+R ATYRS+    Y +   
Sbjct: 361 SRYLSGDNIKLKNGETGKEWERNSEIKYVVQTGTFKDVAVRLRNATYRSN----YSARDA 416

Query: 408 DELRLIVEYPLSI 420
           DE+RL+V Y +++
Sbjct: 417 DEMRLLVSYSVAL 429