Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 416 a.a., porin from Pseudomonas simiae WCS417

 Score =  254 bits (650), Expect = 3e-72
 Identities = 151/422 (35%), Positives = 235/422 (55%), Gaps = 25/422 (5%)

Query: 11  LAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGLGFVG 70
           L ++   + LA+    +E  GF+ED+  ++  R  +F+R++ N    Q   +E    F+ 
Sbjct: 9   LLLATAVASLALPVVAEEH-GFLEDASANLNLRNFFFNRNYTNPTKAQGGAQEWTQSFIL 67

Query: 71  TFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRI 130
             +SGFTQGTVG GVD +G+  LKLD G+G  GT L P   DGR  D++ + G A K RI
Sbjct: 68  DAKSGFTQGTVGFGVDVLGLYSLKLDGGRGTGGTQLLPLDHDGRPADEFGRLGVAFKARI 127

Query: 131 SDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQEQTN- 189
           S T +KVG+    LP+  +DD R LP+  +G  ITS EI+GLTL+ G F + + ++ ++ 
Sbjct: 128 SKTEVKVGEWMPVLPILRSDDGRSLPQTLRGGQITSKEIDGLTLYGGQFRANSPRDDSSM 187

Query: 190 -------RDSFGLKEANVVGGTYAFTD-NLSTSLYYSKVEDYWRKYYANVNWALPISDNQ 241
                  + +F     N  G  YAF D      L+ ++++D + + + N+  + P+  N 
Sbjct: 188 NDLSMFGKTAFTSDRFNFQGAEYAFNDKRTQIGLWNAQLKDIYSQQFINLIHSQPLG-NW 246

Query: 242 GLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGY 301
            L  +   +  K +GSA        +LDN+ +S   +   G +TF L  QK+TG+  +  
Sbjct: 247 TLGANLGFFYGKDDGSAR-----AGELDNKTWSGLFSAKYGGNTFYLGLQKLTGNSAW-M 300

Query: 302 GIDG--GGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDANVA 359
            ++G  GGT  LAN    + ++   EKSWQ R+D NFA  G+PGLT M RY+ GS+ +  
Sbjct: 301 RVNGTSGGT--LANDSYNASYDNAQEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVHTG 358

Query: 360 GTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLS 419
             ++GKEW R+ ++ Y +Q G  K+L+ R+R ++ R      Y +   DE RLIV YP+S
Sbjct: 359 TVTDGKEWGRESELGYTVQSGSLKNLTVRLRNSSMRRD----YSNNEFDENRLIVSYPIS 414

Query: 420 IL 421
           +L
Sbjct: 415 LL 416