Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  279 bits (713), Expect = 1e-79
 Identities = 164/400 (41%), Positives = 226/400 (56%), Gaps = 34/400 (8%)

Query: 39  SVKTRMLYFSRDFRNNEG-GQSRREETGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDS 97
           S+ +R  +   DFR+  G GQ+ R+E   GF+G   SGFT+GTVGVG+DA G LGLKLD 
Sbjct: 31  SLLSRNYFLHSDFRSPSGSGQNYRQEWAQGFIGEVRSGFTEGTVGVGIDAHGFLGLKLDG 90

Query: 98  GKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPE 157
           G+G +GTGL P  SDGR++ +YS  G A+K ++ +T L+ G+     PVF T D RL PE
Sbjct: 91  GRGHSGTGLLPRDSDGRAESEYSSAGAALKMQLGNTQLRYGEMMVETPVFDTGDKRLHPE 150

Query: 158 IAQGTLITSNEIEGLTLHAGHFTSLTAQEQTN-RDSFG-------LKEANVVGGTYAFTD 209
            A G  + + +     L AG FT+   Q+ ++  D F         +  ++ G T+A   
Sbjct: 151 YATGWWVENTDQPDWRLQAGRFTAFNNQDNSSTHDDFSGYGATTHNRAISLAGATFAPNG 210

Query: 210 NLSTSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLD 269
               +LY  ++E+ WR+ Y N+N A     N  L  D N+Y T+  G+A   A     +D
Sbjct: 211 PFGAALYAGQLENTWRQAYLNLNLA---QGNWRL--DGNLYKTRDTGNASAGA-----ID 260

Query: 270 NRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQ 329
             A+SL   Y+ GA   ++AYQKV GD  + +   GG +I+LAN++  +DFN   E SWQ
Sbjct: 261 TLAYSLLAKYSFGAQALSVAYQKVEGDTPFDF--VGGDSIYLANAIKYADFNGPGEHSWQ 318

Query: 330 ARYDLNFAEYGIPGLTFMTRYVR-----GSDANVAGT------SNGKEWERDVDIKYVLQ 378
            RYDLNFA  G PGL+ M RYV      GS A   G         GK WERD+D+KYV+Q
Sbjct: 319 LRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGAYVNQYGDGGKHWERDIDLKYVVQ 378

Query: 379 EGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPL 418
            G AKDLS      ++R++     D   ID + LI+EYPL
Sbjct: 379 SGAAKDLSLSFSHVSHRANQAQAGD--DIDRIYLIIEYPL 416