Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 430 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  254 bits (648), Expect = 5e-72
 Identities = 156/417 (37%), Positives = 225/417 (53%), Gaps = 32/417 (7%)

Query: 23  ASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGG--QSRREETGLGFVGTFESGFTQGT 80
           A A  E  GFIE ++ +++ R  +FSRD+ + +G   QSR +E   GF+    SG+TQGT
Sbjct: 26  AEATAEEAGFIEGARATLQARNYFFSRDYADIKGASTQSRTQEWAQGFILNASSGYTQGT 85

Query: 81  VGVGVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRISDTVLKVGDQ 140
           +GVGVD  G+LG KLDS    A +GL P+   G+S D+YS+ G A+KF++S T LKVG+ 
Sbjct: 86  LGVGVDVTGLLGFKLDSSPEHARSGLLPSLDSGKSADEYSRLGAAIKFKVSQTELKVGEL 145

Query: 141 FTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQEQTNRDS-------- 192
              LPV    D RLLP   QG ++ S E  GLTL AG F S + ++ +N           
Sbjct: 146 MPNLPVLLFSDLRLLPPTYQGAMLESREFAGLTLSAGQFRSTSLRDSSNSQKMYALVNDP 205

Query: 193 --------FGLKEANVVGGTYAFTDN-LSTSLYYSKVEDYWRKYYANVNWALPISDNQGL 243
                   F     N VG  YAF DN  S  ++ +++ED +++ + +   A P+  +  L
Sbjct: 206 INPARLARFTSDRFNYVGADYAFNDNRTSVGVWQAQLEDIYQQRFYSFKHAEPLG-SWTL 264

Query: 244 VFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGI 303
             +   +D + +GS       GD  ++  FSL  A   G HTF + YQ++ GD   G+  
Sbjct: 265 GVNAGYFDAREDGS----KVAGDYDNHALFSLFSA-KTGGHTFYVGYQQIGGDD--GFIQ 317

Query: 304 DGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDANVAGTSN 363
            G  T  + N++   +F+A  E+SWQ R+D NF   G+PGLT   RYV+G D        
Sbjct: 318 VGANTNPMGNTLPTYEFSAPGERSWQVRHDYNFVALGLPGLTSTLRYVKGRDVETGLGFE 377

Query: 364 GKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSI 420
           G++ ERD+D+ YV+Q GP   L  RVR    RS+         IDE RLI+ Y + +
Sbjct: 378 GRDRERDLDLAYVVQSGPLAGLGIRVRNVMARSN-----YRTDIDENRLILSYTIKV 429