Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  256 bits (653), Expect = 1e-72
 Identities = 153/421 (36%), Positives = 230/421 (54%), Gaps = 30/421 (7%)

Query: 20  LAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRN----NEGGQSRREETGLGFVGTFESG 75
           L  A    ++ GF+ED+   ++ R +YF+RDFR+    +  G S+REE   GF+   +SG
Sbjct: 22  LLCAGVNAQAAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFILNVQSG 81

Query: 76  FTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFP-TGSD-GRSQDDYSKGGGAVKFRISDT 133
           +TQG VGVGVDA+GM G KLDS    + +GL P +G D  RS D Y+K G A K ++S+T
Sbjct: 82  YTQGPVGVGVDALGMFGFKLDSSPADSNSGLLPSSGHDPRRSADQYAKMGLAAKVKVSNT 141

Query: 134 VLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQEQTNRDSF 193
           VLK G     +P+   +D RLLP +  G ++TS E+  L          TA++ T+R   
Sbjct: 142 VLKYGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDSTDRQDI 201

Query: 194 GLKEAN-------------VVGGTYAFTDNLSTSLYYSKVEDYWRKYYANVNWALPISDN 240
            +   N             + G  Y F +  S     +K+E+ +R+++  +  + P+   
Sbjct: 202 RVHCKNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLVASQPLPVG 261

Query: 241 QGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYG 300
             L  D  +  +   G+A        ++D+RAFS    Y++G H  +  +Q++ G+    
Sbjct: 262 -SLSADMRLIKSDDIGNAR-----AGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGNSAMP 315

Query: 301 YGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDANVAG 360
           Y +DG    +L N    +DF A  E+SWQ RYD +F   G+PGLTF TRY+ G +  V G
Sbjct: 316 Y-LDGSNP-YLVNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYINGDNIKVPG 373

Query: 361 TS-NGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLS 419
           +S  GKEWERD + KY +Q G  KD+S R+R +TYRS+   +  +  +DE R+IV Y  S
Sbjct: 374 SSVEGKEWERDTEFKYQVQSGTFKDVSVRLRNSTYRSNYERW--ARDMDETRVIVSYNFS 431

Query: 420 I 420
           I
Sbjct: 432 I 432