Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 420 a.a., putative Aromatic compound-specific porin from Pseudomonas putida KT2440

 Score =  246 bits (628), Expect = 9e-70
 Identities = 147/408 (36%), Positives = 229/408 (56%), Gaps = 33/408 (8%)

Query: 29  SKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGLGFVGTFESGFTQGTVGVGVDAI 88
           S  F+ED K S++ R  Y++RDFRN+   QS+R+E   GF+   +SGFT+G VG G+DA+
Sbjct: 22  SAAFVEDFKGSLELRNFYYNRDFRNDGATQSKRDEWAQGFILNLQSGFTEGPVGFGIDAM 81

Query: 89  GMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRISDTVLKVGDQFTALPVFA 148
           G+LG+KLDS   R G+GL    SD + +D+Y K     K R+  T L++G     +P+  
Sbjct: 82  GLLGVKLDSSPDRTGSGLLAYDSDRQVEDEYGKFVATAKARMGKTELRIGGVNPLMPLLW 141

Query: 149 TDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQEQTNRDS-----FGLKEA---NV 200
           +++SRLLP++ +G  +T N+I+ LT+ A    ++  +  T+ +S     +   EA   N 
Sbjct: 142 SNNSRLLPQVFRGGSLTVNDIDKLTVTATRINAVKQRNSTDFESLTATGYAPVEADHYNY 201

Query: 201 VGGTYAFTDNLSTSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIYDTKSEGSAEY 260
           +   +    +++ SL+ +++ED ++ Y+A +    P+ +   ++ D  ++D    GS + 
Sbjct: 202 LAFDFKPAKDMTFSLHAAELEDLYKSYFAGIKVIKPLWEG-NVIADVRVFDASETGSKKL 260

Query: 261 RAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDGGGTIFLANSVARSDF 320
                 ++DNR  S   AY+I  HT    YQK  GD  + + ++G  T     S+  S F
Sbjct: 261 -----GEVDNRTLSSYFAYSIKGHTIGGGYQKAWGDTSFAF-VNGTDTYLFGESLV-STF 313

Query: 321 NAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDANV------------AGTSNGKEWE 368
            A +E+ W ARYD +FA  G+PGL F TRY++G D N                 +GKEWE
Sbjct: 314 TAPEERVWFARYDFDFAALGVPGLLFTTRYMKGDDVNPDLLTSRQAASLRLNGEDGKEWE 373

Query: 369 RDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEY 416
           R  DI YV+Q GPAK +SF+ R +T RS+   Y D  S +E RLI+ Y
Sbjct: 374 RVTDISYVIQSGPAKGVSFQWRNSTNRST---YAD--SANENRLIMRY 416