Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  317 bits (813), Expect = 4e-91
 Identities = 192/447 (42%), Positives = 264/447 (59%), Gaps = 48/447 (10%)

Query: 11  LAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNN---------EGGQSRR 61
           LA++   SQ+   +A+  + GF+E S LSV  R  YF+RD R++         +      
Sbjct: 13  LALAGVGSQVV--AAEKSADGFMEGSTLSVLNRNFYFNRDNRDSVAPTHNPSKQADNGYS 70

Query: 62  EETGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGT----GLFPTGSDGRSQD 117
           E  G   +  FESGFTQGTVGVG+DA  MLGLKLD+G GR G      + P   DG+++D
Sbjct: 71  EAWGHAVITRFESGFTQGTVGVGLDAFAMLGLKLDTGGGRNGGRSSFDVLPVDRDGQARD 130

Query: 118 DYSKGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAG 177
           +Y+K GGA K R+ DTVLKVGD F A PV A  DSRLLPE  +G  + ++ I+ LTL AG
Sbjct: 131 EYTKVGGAAKLRLFDTVLKVGDVFPANPVVAAGDSRLLPESFRGVTLENSSIKDLTLQAG 190

Query: 178 HFTSLTAQEQTN-RDSFGLKEANVV--------GGTYAFTDNLSTSLYYSKVEDYWRKYY 228
              +++    ++ R++F       V        GG Y   +++S SL+ S+++D W +YY
Sbjct: 191 RLHAMSQPMSSDLRENFVTFYGGPVDSPWIAYGGGDYRLNEHVSVSLFSSRLKDAWNQYY 250

Query: 229 ANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTL 288
           A  + + P+S+   L+  FN Y    EG     AFD D      +S       GAHT  L
Sbjct: 251 AGTSLSWPLSEALALIGGFNYYKAVDEGQQRLGAFDND-----IWSAKLGVRFGAHTLAL 305

Query: 289 AYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMT 348
            +Q+  GD D+ Y +    +IFL NS+  SDFNA  E+SW  RYDLN A YG+PGL+FMT
Sbjct: 306 THQRNNGDDDFDY-LRQSDSIFLDNSIQYSDFNAPKERSWMLRYDLNMAAYGVPGLSFMT 364

Query: 349 RYVRGSDA------------NVAGT--SNGKEWERDVDIKYVLQEGPAKDLSFRVRQATY 394
           RY +G+DA            +VAG   ++ K WERD+++KYV+Q G AKDLS RVRQAT 
Sbjct: 365 RYGKGNDADYSNANATYMRRDVAGNPLTDQKRWERDIEVKYVVQTGAAKDLSLRVRQATT 424

Query: 395 RSSDGVYYDSPSIDELRLIVEYPLSIL 421
           R++    ++S  +DE+R+IVEYPLSIL
Sbjct: 425 RAT---AFES-DLDEVRMIVEYPLSIL 447