Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 426 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  233 bits (594), Expect = 8e-66
 Identities = 154/424 (36%), Positives = 218/424 (51%), Gaps = 50/424 (11%)

Query: 24  SAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGLGFVGTFESGFTQGTVGV 83
           + Q     FI D   S++ R  YF RDF  +   QSRR E   GF+   +SG+T G VG 
Sbjct: 18  ACQTAQAAFIHDGSGSLELRNFYFDRDFHGDSATQSRRGEWAQGFMLRLQSGYTDGVVGF 77

Query: 84  GVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRISDTVLKVGDQFTA 143
           G+DA GMLGLKLDS   R+G+GL P GSD R+ DDY+K     K R++ + LK G     
Sbjct: 78  GLDAAGMLGLKLDSSPDRSGSGLLPRGSDKRAADDYAKAVATFKARLAQSELKAGGLSPQ 137

Query: 144 LPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQEQTNRDSFGLKEANVVG- 202
           LP+ A++ SRL P+   G  + S +++  T     FT L       RDS   ++   +  
Sbjct: 138 LPLLASNSSRLFPQWFNGVQLVSKDLDRFT-----FTLLQVDATKLRDSTDYEDLTAMAQ 192

Query: 203 -GTYAFT----------------DNLSTSLYYSKVEDYWRKYYANVNWALPISDNQGLVF 245
            G Y+ T                +NL+ SL+ S +ED +R+ +A   +   +    G VF
Sbjct: 193 QGAYSATVTSDRLRYAGVDYQPLNNLTLSLHTSVLEDLFRRDFAGFKFKTRL--GPGDVF 250

Query: 246 -DFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGID 304
            ++  ++ + +G    RA  G  +DN+  S +  Y++  HTF+  YQKV GD  Y Y   
Sbjct: 251 TEWRWFNAREQG----RALLGG-VDNQTLSTNFGYSVQGHTFSGGYQKVRGDTAYAY--V 303

Query: 305 GGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSD--------- 355
           GG   +L +    S F   +E++W  RYD NFA  GIPGLTF  RYV+G           
Sbjct: 304 GGTDTYLFSEQQVSTFALANERAWMLRYDYNFAAVGIPGLTFNVRYVKGDQVDPQRIASV 363

Query: 356 ---ANVAGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRL 412
              A  AG   G+EWER  DI YV+Q G  +++S R R A+ RS+      + + DE R+
Sbjct: 364 KGRALAAGDGEGREWERTTDITYVVQSGALRNVSLRWRNASMRSN-----FADAADENRV 418

Query: 413 IVEY 416
           IV Y
Sbjct: 419 IVGY 422