Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 417 a.a., phenylacetic acid-specific porin from Pseudomonas putida KT2440

 Score =  280 bits (717), Expect = 4e-80
 Identities = 155/395 (39%), Positives = 225/395 (56%), Gaps = 16/395 (4%)

Query: 32  FIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGLGFVGTFESGFTQGTVGVGVDAIGML 91
           FI DS   ++ R  Y +RDFR +   Q++ EE G GF    ESGFT+G VG GVDA+G L
Sbjct: 32  FIGDSHARLELRNHYINRDFRQSNAPQAKAEEWGQGFTAKLESGFTEGPVGFGVDALGQL 91

Query: 92  GLKLDSGKGRAGTGLFPTGSDGRSQ-DDYSKGGGAVKFRISDTVLKVGDQFTALPVFATD 150
           G+KLDS + R  TGL P G +     DDYS+ G   K R+S + L++G     LPV   +
Sbjct: 92  GIKLDSSRDRRNTGLLPFGPNSHEPVDDYSELGLTGKVRVSKSTLRLGTLQPILPVVVYN 151

Query: 151 DSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQEQTNRDSFGLKEAN-----VVGGTY 205
           D+RLL    QG L+TS +++GLT +AG  T    ++ + RD  G   A+       GG+Y
Sbjct: 152 DTRLLASSFQGGLLTSQDLDGLTFNAGRLTKANLRDSSGRDDIGYGAASSDHLDFGGGSY 211

Query: 206 AFTDNLSTSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDG 265
           A T   + S YY+K++D +R+ +  +    P+++   L  D   +D++++G+        
Sbjct: 212 AITPQTTVSYYYAKLQDIYRQQFVGLIDTRPLAEGVSLRSDLRYFDSRNDGAER-----A 266

Query: 266 DKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDE 325
             +DNR F+      + AH FT  +Q+++GD  + +    GG  F  N V  + F     
Sbjct: 267 GNIDNRNFNAMFTLGVRAHKFTATWQQMSGDSAFPFV--NGGDPFTVNLVTYNTFTRAGL 324

Query: 326 KSWQARYDLNFAEYGIPGLTFMTRYVRGSDANVAGTSNGKEWERDVDIKYVLQEGPAKDL 385
            SWQ RYD +F   GIPGL+FMTRY  G  A  A  +NG+E ERD DI YV+Q GP KD+
Sbjct: 325 DSWQVRYDYDFVAMGIPGLSFMTRYTDGRHAETATVTNGRERERDTDITYVIQSGPFKDV 384

Query: 386 SFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSI 420
           S R R  T+RS +G+   + ++DE RLI+ Y L++
Sbjct: 385 SLRWRNVTFRSGNGL---TNAVDENRLIIGYTLAL 416