Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  270 bits (691), Expect = 5e-77
 Identities = 165/445 (37%), Positives = 239/445 (53%), Gaps = 43/445 (9%)

Query: 12  AVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRN--------NEGGQSRREE 63
           A+S      + A A  + +GFI+ +++ V  R  +FS+D+RN        N   QS   E
Sbjct: 10  ALSLAILLASPAFADSDDEGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQSLHRE 69

Query: 64  TGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTG--------SDGRS 115
            G G +   +SGFT+GTVG GVD  G++GLKLD G G  G G+   G         DG  
Sbjct: 70  WGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNFDGEP 129

Query: 116 QDDYSKGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLH 175
           +D Y K G A+K R  DT L+ GD     PV    D RLLP+  +G +  +N ++GL+L 
Sbjct: 130 KDSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSLDGLSLQ 189

Query: 176 AGHFTSLTAQEQTN-RDSFG------LKEANVV---GGTYAFTDNLSTSLYYSKVEDYWR 225
            G   S + +  +N R   G      +K AN V   GG Y F D L+  L+ S+++D W 
Sbjct: 190 GGKLESSSDRNASNHRGDLGTVYAGRIKGANDVVYLGGDYRFNDQLTLRLHSSRLDDVWN 249

Query: 226 KYYANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHT 285
           + + +V+   P+     L    N Y T+  G A        ++DN ++S+      GAH 
Sbjct: 250 QSFFSVDHVQPLGSELSLKTGLNYYRTRDSGQAL-----AGQIDNDSWSVHAGLAAGAHG 304

Query: 286 FTLAYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLT 345
           F L+Y ++ GD  + Y +     + L  +   SDFN  +E++W+ARYD +FA  G+PGL+
Sbjct: 305 FKLSYTRIDGDTPFDY-VWNTYDLQLDAASQVSDFNNPNERAWEARYDYDFAPLGVPGLS 363

Query: 346 FMTRYVRGSDAN----------VAGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYR 395
              RYVRG+D +            GT +G+ WER++ +KYVLQ GPAKDLSF + QAT+R
Sbjct: 364 LTARYVRGTDIDGTRAGGAYSYFNGTEDGRHWERNLWLKYVLQSGPAKDLSFNLMQATHR 423

Query: 396 SSDGVYYDSPSIDELRLIVEYPLSI 420
              G +    ++DELRLIV+YPL I
Sbjct: 424 VG-GDHVAESNVDELRLIVQYPLDI 447