Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 410 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  242 bits (617), Expect = 2e-68
 Identities = 146/402 (36%), Positives = 214/402 (53%), Gaps = 25/402 (6%)

Query: 29  SKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGLGFVGTFESGFTQGTVGVGVDAI 88
           ++GF++D+K S+  R  Y +RD+      Q + EE    F+  F+SG+T G VG GVD +
Sbjct: 25  AEGFVDDAKASLTLRNFYMNRDYTGT-ASQGKAEEWTQSFIFDFKSGYTPGVVGFGVDVL 83

Query: 89  GMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRISDTVLKVGDQFTALPVFA 148
           G+  +KLD GKG AGT L P   DGR  DD+ +   A K R+S T LKVG+    LP+  
Sbjct: 84  GLYSIKLDGGKGTAGTQLLPVHDDGRPADDFGRTALAGKMRVSRTELKVGEWSPTLPILR 143

Query: 149 TDDSRLLPEIAQGTLITSNEIEGLTLHAGHF--------TSLTAQEQTNRDSFGLKEANV 200
            DD R LP+  QG  +TSNE+ GL+L+ G F         S+       R +F     N 
Sbjct: 144 ADDGRSLPQTLQGAQVTSNELAGLSLYGGQFRQNSPRNDASMQDMSLFTRTAFTSDRFNF 203

Query: 201 VGGTYAFT-DNLSTSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIYDTKSEGSAE 259
            GG Y F  +      +Y+++ED +++ Y  V    P+  N  L  +   +  K +G A+
Sbjct: 204 AGGEYRFNQERTLVGAWYAQLEDIYQQRYFQVQHQQPLG-NWVLGANLGYFWGKDDGGAK 262

Query: 260 YRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDGGGTIFLANSVARSD 319
                  +L+NR  S   +  +G +TF +  QKV GD ++ + ++G     LAN    S 
Sbjct: 263 -----AGELNNRTASGLFSAKLGGNTFYVGLQKVMGDDEW-FRVNGASGGTLANDAFGSS 316

Query: 320 FNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDANVAGTSNGKEWERDVDIKYVLQE 379
           + +  E+SWQ R+D NF   GIPGLT M RY+ G + + A T       R+ ++ YV+Q 
Sbjct: 317 YESARERSWQVRHDFNFVVLGIPGLTLMNRYIHGYNVHNASTQG-----RESELAYVVQS 371

Query: 380 GPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSIL 421
           GP K L+ + R ++ R   G    + S DE RLIV YPLS+L
Sbjct: 372 GPFKALNLKWRNSSQRRDWG---STNSFDENRLIVSYPLSLL 410