Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 417 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  260 bits (665), Expect = 5e-74
 Identities = 156/408 (38%), Positives = 228/408 (55%), Gaps = 34/408 (8%)

Query: 31  GFIEDSKLSVKTRMLYFSRDFRNNEG--------GQSRREETGLGFVGTFESGFTQGTVG 82
           GFIEDSKL ++ R +YF+ +FR+ +G         +S R E   GF+  ++SGFTQGT+G
Sbjct: 25  GFIEDSKLKLQLRNVYFNENFRDEQGMSARAAATAKSERVEWAQGFLLDYQSGFTQGTLG 84

Query: 83  VGVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRISDTVLKVGDQFT 142
           +GVDA+G+LG++LDSG+GR+GTGL P   DGR+ D+++  G   K R+  TV+K G    
Sbjct: 85  LGVDAMGLLGVRLDSGRGRSGTGLLPVHDDGRAADEFASAGITAKARLGSTVVKHGTLLP 144

Query: 143 ALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQEQTNRDSFGL------- 195
             PV   +D+RLLP+  QGT +TS +I+ LTL AGH      +++ + DS GL       
Sbjct: 145 KTPVLVYNDARLLPQTYQGTQLTSTDIDNLTLTAGHLDRF--KQRDSSDSTGLYLDGYGG 202

Query: 196 ---KEANVVGGTYAFTDNLSTSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIYDT 252
               + +  G  YA +  L  S ++ ++E ++R+ +A +   LP+     L  D   + +
Sbjct: 203 PASGDFSFAGADYAVSKQLRLSYFHGELEHFYRQDFAGLVHDLPLGGGV-LTTDLRYFKS 261

Query: 253 KSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDGGGTIFLA 312
           +  G+A      G  +DN  FS   +Y    HT    YQ +  DG+ G     G T++  
Sbjct: 262 RDSGTAY-----GGGIDNDMFSGQLSYAHSGHTVGAGYQVL--DGEAGLPYISGATVYSF 314

Query: 313 NSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDANVAGTSNGKEWERDVD 372
           ++V    F  E+EK+W A Y  NFA  G+PGLTFMTRY+ G D   +G    KEWERD +
Sbjct: 315 SNVGIGKFIEEEEKTWMASYAYNFAAAGVPGLTFMTRYLSG-DNGRSGGEGIKEWERDAE 373

Query: 373 IKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSI 420
           I YV+Q GP K L  ++R   YRS      DS      RL + Y ++I
Sbjct: 374 IAYVVQGGPLKGLGVKLRNYVYRSDFARGRDSN-----RLYLTYDIAI 416