Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 429 a.a., tricarboxylate-specific outer membrane porin from Pseudomonas putida KT2440

 Score =  285 bits (729), Expect = 2e-81
 Identities = 164/422 (38%), Positives = 244/422 (57%), Gaps = 28/422 (6%)

Query: 14  SAGTSQLAMASAQDESKG-FIEDSKLSVKTRMLYFSRDFRNNEGGQ-SRREETGLGFVGT 71
           SA  S LA+A     S+  F EDS  + +TR +YF+RDFR+    Q S+R+E   GF+  
Sbjct: 20  SAIASALALAGVAPMSQAAFFEDSTATFETRNMYFNRDFRDGTSAQQSKRDEWAQGFILN 79

Query: 72  FESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRIS 131
           FESG+T GTVG G+DA+GMLG+KLDS   R  +GL PT  DG++ D+YSK G   K +IS
Sbjct: 80  FESGYTDGTVGFGLDALGMLGIKLDSSPDRTDSGLLPTHDDGKAADEYSKLGLTGKVKIS 139

Query: 132 DTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLTAQEQTNRD 191
            T LK+G     LP    +D R+LP+  +G L+TS EI+GLT   G       +  TN +
Sbjct: 140 QTELKIGTLIPELPTLQPNDGRILPQTFEGGLLTSKEIKGLTFTGGRIDKAKDRNDTNWE 199

Query: 192 SFGLKEAN-VVGGT------------YAFTDNLSTSLYYSKVEDYWRKYYANVNWALPIS 238
              L   N   GGT            Y FTD ++ S ++++++D +R+++  +    P  
Sbjct: 200 DLALNNKNGRFGGTFSADNLALGGLDYQFTDRITGSYHFAQLDDIYRQHFIGMVATQPWG 259

Query: 239 DNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGD 298
               L  D  +  +   G+A+        +DN   +   +Y +G H  + A+Q+++G+  
Sbjct: 260 PGT-LGADLRLAMSDDAGAAK-----AGNIDNTTVNGMLSYALGGHKVSAAWQQLSGESA 313

Query: 299 YGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDANV 358
           + Y +DG    +L N V  +DF   DE+SWQARYD NFA  G+PGLTFMTRY+ G + + 
Sbjct: 314 FPY-VDGADP-YLVNFVQINDFAGADERSWQARYDYNFAALGVPGLTFMTRYISGDNVSR 371

Query: 359 AGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPL 418
           A    GKEWER+ ++KYV+Q GP K+++ R+R AT+RS+      +   DE+RL+V Y +
Sbjct: 372 AAGGEGKEWERNTELKYVVQSGPLKNVAVRLRNATFRSN-----FARDADEVRLLVSYSV 426

Query: 419 SI 420
           ++
Sbjct: 427 AL 428