Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 418 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  264 bits (674), Expect = 4e-75
 Identities = 156/402 (38%), Positives = 222/402 (55%), Gaps = 24/402 (5%)

Query: 31  GFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGLGFVGTFESGFTQGTVGVGVDAIGM 90
           GFIED+K ++  R  Y +R+F +    Q + EE    F+    SGFTQGTVG GVD +G+
Sbjct: 30  GFIEDAKATLNLRNFYINRNFVDPAHPQGKAEEWTQSFILDARSGFTQGTVGFGVDVLGL 89

Query: 91  LGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRISDTVLKVGDQFTALPVFATD 150
             +KLD GKG   T L P   DGR  DD+ + G A+K ++S+T LKVG+    LP+  +D
Sbjct: 90  YSVKLDGGKGTTNTHLLPVHGDGRPADDFGRLGVALKAKLSETELKVGEWMPVLPILRSD 149

Query: 151 DSRLLPEIAQGTLITSNEIEGLTLHAGHF--------TSLTAQEQTNRDSFGLKEANVVG 202
           D R LP+  +G  +TS EI GLTL+AG F         S+       + +F     N  G
Sbjct: 150 DGRSLPQTFRGGQLTSREIAGLTLYAGQFRGNSPRNDASMEDMSLNGKAAFTSDRFNFGG 209

Query: 203 GTYAFTDNLS-TSLYYSKVEDYWRKYYANVNWALPISDNQGLVFDFNIYDTKSEGSAEYR 261
           G Y F D  +   L+ ++++D +R+ Y N+  + P+ D   L  +   +  K +G+    
Sbjct: 210 GEYTFNDKRTMIGLWDAQLKDIYRQQYLNLTHSQPLGD-WTLGANLGYFIGKEDGAER-- 266

Query: 262 AFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDGDYGYGIDG--GGTIFLANSVARSD 319
                KLDNR  S   +     HTF +  QKV+GD D    ++G  GGT  LAN    S 
Sbjct: 267 ---AGKLDNRTASALLSARYQGHTFYVGLQKVSGD-DAWMRVNGTSGGT--LANDSYNSS 320

Query: 320 FNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDANVAGTSNGKEWERDVDIKYVLQE 379
           F+   E+SWQ R+D NFA  G+PGLT M RY++G +  V    +GKEW R+ ++ YV+Q 
Sbjct: 321 FDNAKERSWQVRHDFNFATVGVPGLTLMNRYIKGDNVTVGSVDDGKEWARETELAYVVQS 380

Query: 380 GPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSIL 421
           G  KDLS + R +T R      + + + DE RLIV YPL++L
Sbjct: 381 GSFKDLSLKWRNSTMRRD----FSTNAFDENRLIVSYPLNLL 418