Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 444 a.a., outer-membrane porin E from Pseudomonas putida KT2440

 Score =  234 bits (597), Expect = 4e-66
 Identities = 151/452 (33%), Positives = 222/452 (49%), Gaps = 48/452 (10%)

Query: 7   SMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREETGL 66
           S +ALAV+ G     + + Q  + GF+EDSKLS+ +R +YF+ D  N E G  ++E +G 
Sbjct: 4   SSLALAVALG-----VLAQQAGAAGFVEDSKLSLSSRTMYFNDD--NRESGIDQKE-SGQ 55

Query: 67  GFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGR---AGTGLFPTGSDGRSQDDYSKGG 123
           GF   + SGFTQGTVG GVD   + G+ LD G+G    A    FP+ SDG +  D+++ G
Sbjct: 56  GFKLDYLSGFTQGTVGFGVDVQALWGIHLDGGRGSRPDANNTFFPSDSDGSAVHDWARIG 115

Query: 124 GAVKFRISDTVLKVGDQFTA-LPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSL 182
           G  K R S T +  G      LP+  ++D RLLP+  +G  + S EI+ LT++AG  T  
Sbjct: 116 GNAKARFSKTEVHYGSALAPMLPILVSNDGRLLPQTFEGGTLQSKEIDNLTINAGQLTHA 175

Query: 183 TAQEQTNRDSFGLKEA-------NVVGGTYAFTDNLSTSLYYSKVEDYWRKYYANVNWAL 235
             +  +NR    +  A          GG Y  T +L+   YYS +ED++++++       
Sbjct: 176 MGRASSNRTGLSVSGAFRDSNKFQFAGGDYKLTPDLTLQYYYSNLEDFYKQHFLGATHVF 235

Query: 236 PISDNQGLVFDFNIYDTKSEGSAEYR--AFDGD--------KLDNRAFSLSGAYNIGAHT 285
            I+DNQ    D   +D+ S+G       AFD +        ++DN+ +S    Y +G H 
Sbjct: 236 KIADNQSFKTDLRYFDSSSDGKNGQTGYAFDNNGGYAKNSGEVDNKTWSAMFTYTLGGHA 295

Query: 286 FTLAYQKVTGDGDY---------------GYGIDGGGTIFLANSVARSDFNAEDEKSWQA 330
             L +Q+V  DG +                   +GG + +L      + F    E +   
Sbjct: 296 LMLGHQQVGDDGGFVWLNQGSVRKDGSTSSLEGNGGASFYLFTDSMINQFARAGENTTFG 355

Query: 331 RYDLNFAEYGIPGLTFMTRYVRGSDA-NVAGTSNGKEWERDVDIKYVLQEGPAKDLSFRV 389
           +Y  +FA  G+PGL     Y+RG D  N +G     EWERD  + Y LQEG  K L F +
Sbjct: 356 QYSYDFAALGVPGLKASVSYLRGDDVRNRSGDGTYNEWERDARVDYTLQEGTLKGLGFSL 415

Query: 390 RQATYRSSDGVYYDSPSIDELRLIVEYPLSIL 421
           RQ  YR S     D    D+ R IV Y  + L
Sbjct: 416 RQGVYRGSGESALDK---DQTRFIVNYTYNFL 444