Pairwise Alignments

Query, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  327 bits (837), Expect = 6e-94
 Identities = 194/457 (42%), Positives = 263/457 (57%), Gaps = 51/457 (11%)

Query: 4   MKWSMIALAVSAGTSQLAM-ASAQDESKGFIEDSKLSVKTRMLYFSRDFRN--------- 53
           +K  +   AVSA +   A+ A A+D+ +GFIE S L+V  R  YF+RD R+         
Sbjct: 3   IKVPLYLAAVSALSGSYAISAQAEDKPEGFIEGSSLTVLNRNFYFNRDNRDSTAPTYNSG 62

Query: 54  --NEGGQSRREETGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGT----GLF 107
             N  G S  E      +  F SGFTQGTVG GVDA  M+GLKLD+G GR G      + 
Sbjct: 63  KGNTNGYS--EAWAHAIISKFNSGFTQGTVGFGVDAFAMIGLKLDTGDGRNGGRSSFDVL 120

Query: 108 PTGSDGRSQDDYSKGGGAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSN 167
           P  + G ++D+Y+K GGA K R+ DT++KVGD F + PV A+ DSRLLPE  +G  + + 
Sbjct: 121 PVDNKGEARDEYTKVGGAAKVRLFDTIVKVGDVFPSTPVVASGDSRLLPESFRGVTVENT 180

Query: 168 EIEGLTLHAGHFTSLTAQEQTN-RDSFGLKEANVV--------GGTYAFTDNLSTSLYYS 218
            I+GLTL  G   +++    +N  D+F       V        GG Y+  DN + S+Y S
Sbjct: 181 SIQGLTLQGGRLHAMSQPVSSNLNDNFVTFYGGPVNSPWIGYGGGDYSINDNWTVSVYAS 240

Query: 219 KVEDYWRKYYANVNWALPISDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGA 278
           +++D W +YYA  +   P+SD+  L+  FN Y    EG      F     DN  +S    
Sbjct: 241 QLKDVWNQYYAGTSVVYPLSDDLALIGGFNYYKAVDEGKKRLGEF-----DNNIWSAKVG 295

Query: 279 YNIGAHTFTLAYQKVTGDGDYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAE 338
              GAHT  L++Q+  GD D+ Y +    +IF+ NS+  SDFN+  E+SW  RYDLNF  
Sbjct: 296 VRYGAHTLALSHQRNNGDDDFDY-LRQSDSIFVDNSIQYSDFNSPKERSWMLRYDLNFTS 354

Query: 339 YGIPGLTFMTRYVRGSDANVAGTS--------------NGKEWERDVDIKYVLQEGPAKD 384
           YGIPGLTFMTRY RGS A+ +  +              N K WERDV++KYV+Q GPAKD
Sbjct: 355 YGIPGLTFMTRYARGSGADYSNANQFYMRTDDNGNPLDNQKRWERDVEVKYVVQTGPAKD 414

Query: 385 LSFRVRQATYRSSDGVYYDSPSIDELRLIVEYPLSIL 421
           LSFR+RQAT R++    ++S  +DE R+I+EYPLSIL
Sbjct: 415 LSFRLRQATTRAT---AFES-DLDETRVIIEYPLSIL 447