Pairwise Alignments

Query, 354 a.a., DNA polymerase IV from Pseudomonas putida KT2440

Subject, 393 a.a., DNA polymerase IV from Magnetospirillum magneticum AMB-1

 Score =  214 bits (545), Expect = 3e-60
 Identities = 133/343 (38%), Positives = 184/343 (53%), Gaps = 22/343 (6%)

Query: 6   IIHVDCDCFYAAIEMRDDPRLAGRPMAVGGSPDHRGVIATCNYEARAYGVRSAMSSRHAL 65
           I H+DCD FYA++E RD+P LA +P+ VG  P  RGV+ T  Y AR +G RSAM    AL
Sbjct: 45  IAHIDCDAFYASVEKRDNPALADKPVIVG-HPGGRGVVTTACYVARKFGPRSAMPMFKAL 103

Query: 66  KLCPDLLIVKPRFEAYREASREIHTIFRDYTELIEPLSLDEAYLDVSDS-QWYSGSATRI 124
           +LCP  +++ P    Y++ S +I  +F   T L+EPLSLDEAYLD+S   +     A  +
Sbjct: 104 ELCPHAVVIPPNIAKYKQVSAQIRALFEKATPLVEPLSLDEAYLDLSPGVRLVDRPAAVL 163

Query: 125 AEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPNEVETFVAALPVARLH 184
              + R +   + ITVS G++ NKFLAK+ASD  KP G  VI   E E F+A  PV  L 
Sbjct: 164 LARLARAIRLQVGITVSVGLSYNKFLAKMASDLNKPEGFSVIGREEAEAFLAPRPVTALF 223

Query: 185 GVGKVTADKLTRLGIETCLHLREWSRLALVREFGSFGERLWGLARGIDERAVHNDSRRQS 244
           G+G  TA ++   GI T   L+       V  +G FG RL G+  GID R V+ D   +S
Sbjct: 224 GIGAATAARMADQGITTIAQLQALPETEFVARWGKFGRRLAGMVHGIDHRPVNPDRPAKS 283

Query: 245 VSVENTYDTDLPDLASCLARLPELLDSLNERIARMDSSYRPDKPFVKVKFHDFSQTTM-- 302
           VS E T+  D+ D  +    LP L + +  R+ R++ + R     +K+K  DF   T   
Sbjct: 284 VSTETTFARDIRDAKALTEALPPLAEGVARRLERVNLAGR--TVVLKLKTADFKVITRHL 341

Query: 303 ---EQAGAGRDLES------YRQLLGQAFARGGKPVRLLGVGV 336
              +  G    +         RQ+ G+AF       RLLG+GV
Sbjct: 342 RLPDPTGRAETIVRAGLALLERQMDGRAF-------RLLGIGV 377