Pairwise Alignments

Query, 354 a.a., DNA polymerase IV from Pseudomonas putida KT2440

Subject, 351 a.a., DNA polymerase IV (NCBI) from Escherichia coli BW25113

 Score =  310 bits (794), Expect = 4e-89
 Identities = 169/340 (49%), Positives = 222/340 (65%), Gaps = 2/340 (0%)

Query: 3   LRKIIHVDCDCFYAAIEMRDDPRLAGRPMAVGGSPDHRGVIATCNYEARAYGVRSAMSSR 62
           +RKIIHVD DCF+AA+EMRD+P L   P+A+GGS + RGVI+T NY AR +GVRSAM + 
Sbjct: 1   MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTG 60

Query: 63  HALKLCPDLLIVKPRFEAYREASREIHTIFRDYTELIEPLSLDEAYLDVSDSQWYSGSAT 122
            ALKLCP L ++  RF+AY+EAS  I  IF  YT  IEPLSLDEAYLDV+DS    GSAT
Sbjct: 61  MALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSAT 120

Query: 123 RIAEDIRRRVARTLHITVSAGVAPNKFLAKIASDWRKPNGLFVITPNEVETFVAALPVAR 182
            IA++IR+ +   L +T SAGVAP KFLAKIASD  KPNG FVITP EV  F+  LP+A+
Sbjct: 121 LIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAK 180

Query: 183 LHGVGKVTADKLTRLGIETCLHLREWSRLALVREFGSFGERLWGLARGIDERAVHNDSRR 242
           + GVGKV+A KL  +G+ TC  +++   + L++ FG FG  LW  ++GIDER V+++  R
Sbjct: 181 IPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLR 240

Query: 243 QSVSVENTYDTDLPDLASCLARLPELLDSLNERIARMDSSYRPDKPFVKVKFHDFSQTTM 302
           +SV VE T   D+   + C A +  L   L  R+A++       +  VK+KF DF QTT 
Sbjct: 241 KSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ 300

Query: 303 EQAGAGRDLESYRQLLGQAF--ARGGKPVRLLGVGVRLRD 340
           E      +         + +   RGG+ VRL+G+ V L D
Sbjct: 301 EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD 340