Pairwise Alignments

Query, 236 a.a., S4 domain protein from Pseudomonas putida KT2440

Subject, 290 a.a., 23S rRNA pseudouridine synthase (NCBI) from Escherichia coli BW25113

 Score = 70.1 bits (170), Expect = 4e-17
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 16/234 (6%)

Query: 5   VRLSKRLIEQLGCSRREAEQYIEGGWVTVDG----VVVEQPQFKVEQQRVELLPGARAET 60
           VRL+K + E   CSRREA++YIE G V ++G    +  +     V +   +L+    AE 
Sbjct: 7   VRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVKPGDVVKVNGQLIEPREAED 66

Query: 61  LEPVTLLLNQPAGMDSEDARASMNMGSLSEAHREGVRALHGHFARQACVAPLERGASGLQ 120
           L  V + LN+P G+ S          +  +  R+ +     H  R   +  L++ + GL 
Sbjct: 67  L--VLIALNKPVGIVS----------TTEDGERDNIVDFVNHSKRVFPIGRLDKDSQGLI 114

Query: 121 VFTQDWRVSRKIEADLRRLEQEFIIEVRGETTPQALERLARGAMRNDRELPKAKASWQNE 180
             T    +  KI       E+E+++ V    T + +  ++ G         K K   +  
Sbjct: 115 FLTNHGDLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMSAGVPILGTVTKKCKVKKEAP 174

Query: 181 THLRMVLKNPQPGQISELCAYLRLELLGMRRIRLGGVSMGKLPLGQWRYLATSE 234
              R+ L      QI  +C +   E+  + R R+  VS+  +PLG+WR L   E
Sbjct: 175 FVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPLGEWRDLTDDE 228