Pairwise Alignments

Query, 412 a.a., porin-like protein from Pseudomonas putida KT2440

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  277 bits (708), Expect = 5e-79
 Identities = 161/418 (38%), Positives = 235/418 (56%), Gaps = 24/418 (5%)

Query: 11  LLGAGVIAGLPGTSLAAGFVEDGKATLGLRNFYINRNF----TNPSNPQSKAEEWTQSFI 66
           LL AGV A       AAGF+ED  A +  RN Y NR+F    ++ S   SK EEW Q FI
Sbjct: 22  LLCAGVNAQ------AAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGASKREEWAQGFI 75

Query: 67  LDARSGFTEGPIGFGVDVLGLWSVKLDGGGGTYGTALLPR--HDDGRPADDYGRLAVAGK 124
           L+ +SG+T+GP+G GVD LG++  KLD       + LLP   HD  R AD Y ++ +A K
Sbjct: 76  LNVQSGYTQGPVGVGVDALGMFGFKLDSSPADSNSGLLPSSGHDPRRSADQYAKMGLAAK 135

Query: 125 ARISKTELKIGEWMPVLPILRSDDGRSLPQTFRGGQVTSNEIAGLTLYGGQFRGNSPRND 184
            ++S T LK G  MP +P+L+ +DGR LP  F G  +TS E+  L     +    + R+ 
Sbjct: 136 VKVSNTVLKYGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDS 195

Query: 185 ASMEDMSYG--------GGVSDRFNFVGGEYKFNQDRTQVGLWNAVLKDVYQQQYLQLSH 236
              +D+              +D F+  G +Y+FN+ R       A L+++Y+Q +L L  
Sbjct: 196 TDRQDIRVHCKNKRYACDTEADHFDLAGVDYRFNE-RFSAQYQVAKLENIYRQHFLGLVA 254

Query: 237 SQPVGDWTLGANLGYFHGDEDGSERAGQLDNKTYSGMFSAKYGGSTFWVGLQKVDGDTWM 296
           SQP+   +L A++     D+ G+ RAG++D++ +SGM     GG     G Q++ G++ M
Sbjct: 255 SQPLPVGSLSADMRLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGNSAM 314

Query: 297 RVNGTSGGTLANDSYNSSFDNANERSWQVRHDFNFVTVGVPGLTLMNRYISGRDVH-SGG 355
                S   L N +  + F  A ERSWQVR+D++F  +GVPGLT   RYI+G ++   G 
Sbjct: 315 PYLDGSNPYLVNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYINGDNIKVPGS 374

Query: 356 VTDGKEWVRETELAYVIQSGAFKDLSVKWRNSSIRRDYSN--NEFDENRLIFNYPLSL 411
             +GKEW R+TE  Y +QSG FKD+SV+ RNS+ R +Y     + DE R+I +Y  S+
Sbjct: 375 SVEGKEWERDTEFKYQVQSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIVSYNFSI 432