Pairwise Alignments

Query, 412 a.a., porin-like protein from Pseudomonas putida KT2440

Subject, 421 a.a., basic-amino-acid specific porin OprD from Pseudomonas putida KT2440

 Score =  258 bits (659), Expect = 2e-73
 Identities = 154/424 (36%), Positives = 225/424 (53%), Gaps = 24/424 (5%)

Query: 7   LPFALLGAGVIAGLPGTSLAA------GFVEDGKATLGLRNFYINRNFTNPSNPQSKAEE 60
           + ++++   V AG    ++A+      GF+ED K ++  R  Y +R+F N    QS+ EE
Sbjct: 4   MKWSMIALAVSAGTSQLAMASAQDESKGFIEDSKLSVKTRMLYFSRDFRNNEGGQSRREE 63

Query: 61  WTQSFILDARSGFTEGPIGFGVDVLGLWSVKLDGGGGTYGTALLPRHDDGRPADDYGRLA 120
               F+    SGFT+G +G GVD +G+  +KLD G G  GT L P   DGR  DDY +  
Sbjct: 64  TGLGFVGTFESGFTQGTVGVGVDAIGMLGLKLDSGKGRAGTGLFPTGSDGRSQDDYSKGG 123

Query: 121 VAGKARISKTELKIGEWMPVLPILRSDDGRSLPQTFRGGQVTSNEIAGLTLYGGQFRGNS 180
            A K RIS T LK+G+    LP+  +DD R LP+  +G  +TSNEI GLTL+ G F   +
Sbjct: 124 GAVKFRISDTVLKVGDQFTALPVFATDDSRLLPEIAQGTLITSNEIEGLTLHAGHFTSLT 183

Query: 181 PRNDASMEDMSYGGGVSDRFNFVGGEYKFNQDRTQVGLWNAVLKDVYQQQYLQLSHSQPV 240
            +   + +  S+G       N VGG Y F  D     L+ + ++D +++ Y  ++ + P+
Sbjct: 184 AQEQTNRD--SFG---LKEANVVGGTYAFT-DNLSTSLYYSKVEDYWRKYYANVNWALPI 237

Query: 241 GD-WTLGANLGYFHGDEDGSER-----AGQLDNKTYSGMFSAKYGGSTFWVGLQKVDGDT 294
            D   L  +   +    +GS         +LDN+ +S   +   G  TF +  QKV GD 
Sbjct: 238 SDNQGLVFDFNIYDTKSEGSAEYRAFDGDKLDNRAFSLSGAYNIGAHTFTLAYQKVTGDG 297

Query: 295 WMRVNGTSGGT--LANDSYNSSFDNANERSWQVRHDFNFVTVGVPGLTLMNRYISGRDVH 352
                   GGT  LAN    S F+  +E+SWQ R+D NF   G+PGLT M RY+ G D +
Sbjct: 298 DYGYGIDGGGTIFLANSVARSDFNAEDEKSWQARYDLNFAEYGIPGLTFMTRYVRGSDAN 357

Query: 353 SGGVTDGKEWVRETELAYVIQSGAFKDLSVKWRNSSIRRD----YSNNEFDENRLIFNYP 408
             G ++GKEW R+ ++ YV+Q G  KDLS + R ++ R      Y +   DE RLI  YP
Sbjct: 358 VAGTSNGKEWERDVDIKYVLQEGPAKDLSFRVRQATYRSSDGVYYDSPSIDELRLIVEYP 417

Query: 409 LSLL 412
           LS+L
Sbjct: 418 LSIL 421