Pairwise Alignments

Query, 412 a.a., porin-like protein from Pseudomonas putida KT2440

Subject, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  199 bits (506), Expect = 1e-55
 Identities = 149/421 (35%), Positives = 218/421 (51%), Gaps = 48/421 (11%)

Query: 28  GFVEDGKATLGLRNFYINRNFTNPSNPQSKAEEWTQSFILDARSGFTEGPIGFGVDVLGL 87
           GF+ED  A + LRN YINR+  + ++ Q    EW Q+FI +  SGFT+G +G GVD  GL
Sbjct: 29  GFIEDSHANVLLRNAYINRDKKHGTDDQI---EWGQAFIANFSSGFTQGTVGVGVDAFGL 85

Query: 88  WSVKLDGG---GGTYGTALLPRHD----DGRPADDYG--RLAVAGKARISKTELKIGEWM 138
           ++V+LDGG    G  G      H+    +G  +  +   R   A K RIS T LK G+ M
Sbjct: 86  YAVRLDGGKGHNGGGGVDFFKPHETTNAEGNASSPHNLARGGAAVKFRISNTVLKYGDQM 145

Query: 139 PVLPILRSDDGRSLPQTFRGGQVTSNEIAGLTLYGGQFRGNSPRNDASMEDMSYGGGVSD 198
           P LP+L+ DD R LP++F G  +TS EI GL L  G+F     R  A   D   GGG+  
Sbjct: 146 PALPVLQYDDARLLPESFTGTLITSKEIQGLELNAGRFT-QEARKSAERRD---GGGLKS 201

Query: 199 RFNFVGGEYKFNQDRTQVGLWNAVLKDVYQQQYLQLSHSQPVG---DWTLGANLGYFHGD 255
             N +GG YKF  D     L+ A  +DV ++ YL L++  P+      TL  N GY    
Sbjct: 202 -INVLGGSYKFT-DNFTASLYTADNEDVMKKHYLGLNYVFPIASDQSLTLDFN-GYKSDI 258

Query: 256 EDGSERAGQLD---NKTYSGMFSAKYGGSTFWVGLQKVDGDTWMRVN--------GTSGG 304
            +   +A  L+   N  +S   +  YG  +F +  Q+  G T             G  G 
Sbjct: 259 NNKYVKAAGLNGDSNTIWSLAATYAYGAHSFTLAHQRSTGSTGYNYGFYQNAGGVGDGGS 318

Query: 305 T--LANDSYNSSFDNANERSWQVRHDFNFVTVGVPGLTLMNRYISGRDVHSGGVT----- 357
           T  LAN SY S F+  +ERSWQ+ +  +F   G+PGLT    Y+ G ++++  V      
Sbjct: 319 TIYLAN-SYWSDFNAEDERSWQLGYGLDFGAYGIPGLTYKLAYVVGDNINTRNVANPQGF 377

Query: 358 -DGKEWVRETELAYVIQSGAFKDLSVKWR------NSSIRRDYSNNEFDENRLIFNYPLS 410
            +GKE     ++ YV+Q G  KDLS+K R      N++++++  N++ +E R+   YP+S
Sbjct: 378 GEGKEREIFNQIRYVVQDGPAKDLSIKLRSSFLRTNNAVQQNGYNDDGNEVRVFVEYPIS 437

Query: 411 L 411
           +
Sbjct: 438 I 438