Pairwise Alignments

Query, 861 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score =  342 bits (876), Expect = 9e-98
 Identities = 219/567 (38%), Positives = 310/567 (54%), Gaps = 31/567 (5%)

Query: 296  QQSNQALEASEQRFRAVAESASDWIWETDRQQ-RLTYLSQRFANVTGYPVDGWLGHPLNQ 354
            Q++  AL++SE++F     S+ D I  T+R   R   ++  F  +TGY  D  +GH + +
Sbjct: 526  QRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYLEVNDGFCRLTGYSTDEVIGHTVYE 585

Query: 355  L-LACDTTPLSPWLDALTAAEPQQLANLRCTYRDQNGQNRYCRISARAIWRDGKAIGFRG 413
            + +  D    S  L  L   E  ++ +     R++ G      +S   I  + +      
Sbjct: 586  IGIWADDKQRSALLAELR--ERGRVHHREMLGRNKRGDILTVEVSVEPITLN-EVDCLLL 642

Query: 414  TASDITDEVDAHARIQHLSLHDPLTGLANRNKLARHLEQAL-------LRGSDSPPLTLL 466
            TA D++   +A A+I+HL+ HDPLT L NR  L   L Q +       LRG+      LL
Sbjct: 643  TARDVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGA------LL 696

Query: 467  LLDLDNFKPINDSLGHAAGDAVLQEVATRLRDTTRDGDLVARLGGDEFILVLSGMDNSSE 526
             LDLD+FK INDSLGH  GD VL+ +  RL  + R  D VARLGGDEF+++LSG++ S E
Sbjct: 697  FLDLDHFKHINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSRE 756

Query: 527  -----IDRFCARLIGLLQQPIVFENQPLHIGASIGVAQTRNQGFDAGELIRCADIALYQA 581
                 +      L  LL +P+  + Q L +  SIGVA   + G    +L++ ADIALY+A
Sbjct: 757  HVEEKVRELADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRA 816

Query: 582  KADGKNTWRYFVAEMNQQIQYRRQLENDLRRALRNEEFELHYQPRYRLDDLRIVAVEALV 641
            K  G+NT + F   M +    R ++ENDLR AL   E  LH+QP+    D RIV  E L+
Sbjct: 817  KDSGRNTTQLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRIVGAEVLL 876

Query: 642  RWRHPQEGLLAPDTFIPLAEQSDIIVALGRWVLREACRTAHDWPADVLVS-------VNL 694
            RW HPQ G   P  FI + E+S +I+ +G W+L EAC        D L+        VN+
Sbjct: 877  RWHHPQLGQQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADDFNLCVNI 936

Query: 695  SPAQFLRSDVVADVRETLLDTAFPAQRLELEITENVMLNDIEGALGTMLSLKELGVRLNM 754
            SP QF ++D V  V  +L D   P Q L LEITE +++ ++E  +  M  LK  GV   M
Sbjct: 937  SPRQFRQNDFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAM 996

Query: 755  DDFGTGYSSLGYLRTYPFDSIKIDKRFISGLNNNGGSDRAVVQAIINLGEAMGLTVTAEG 814
            DDFGTGYSSL YL+  P D++KID+ F+     +  +D  +V+AI+ +  ++ L V AEG
Sbjct: 997  DDFGTGYSSLTYLKRLPVDALKIDQSFVRDAPVD-PNDAEIVRAIVAMARSLDLAVIAEG 1055

Query: 815  VESEHQLKSLEKDRCHEVQGYYLSKPL 841
            VE   QL  LE+  CH  QGY  S+PL
Sbjct: 1056 VELTEQLAFLERLGCHLYQGYLHSRPL 1082



 Score = 42.4 bits (98), Expect = 2e-07
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 27/148 (18%)

Query: 296 QQSNQALEASEQRFRAVAESASDWIWETDRQQRLTYLSQRFANVTGYP-----------V 344
           +++ QAL+ S++R     +SA    W+      + Y S R A + G P            
Sbjct: 272 KRAEQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLPPIPFHESFDAFF 331

Query: 345 DGWLGHPLNQLLACDTTPLSPWLDALTAAEPQQLANLRCTYRDQ--NGQNRYCRISARAI 402
           +G   H  N +             A  +       N + TYR Q  NG +RY    AR +
Sbjct: 332 EGVPEHERNSM-----------RQAYRSLREGPAGNYQITYRVQLENGTSRYIESRAR-L 379

Query: 403 WRDGKAIGFR--GTASDITDEVDAHARI 428
           +RD + I  R  GT  DITD+V+   R+
Sbjct: 380 YRDDQGIPLRMAGTLLDITDQVEREQRL 407



 Score = 30.8 bits (68), Expect = 5e-04
 Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 15/140 (10%)

Query: 297 QSNQALEASEQRFRAVAESASDWIWETDRQQRLTYLSQRFANVTGYPVDGWLGHPLNQLL 356
           +  Q L ASE++F ++ + + D I  T RQ    ++    A    +   GW      Q+L
Sbjct: 402 EREQRLSASEEKFASLFQVSPDPICVT-RQDTGQFIEINPAFTQTF---GWSSA---QVL 454

Query: 357 ACDTTPLSPWLDALTAAE-------PQQLANLRCTYRDQNGQNRYCRISARAIWRDGKAI 409
                 +  W +++  A+        Q L+N+      +NG    C IS+R I  D +  
Sbjct: 455 GRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGDPLTCVISSRLITVDDQPC 514

Query: 410 GFRGTASDITDEVDAHARIQ 429
               T  DIT +  A A ++
Sbjct: 515 SVT-TLRDITQQQRAEAALK 533