Pairwise Alignments

Query, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas putida KT2440

Subject, 1072 a.a., DISARM system SNF2-like helicase DrmD from Rhodanobacter sp000427505 FW510-R12

 Score =  108 bits (269), Expect = 2e-27
 Identities = 152/599 (25%), Positives = 247/599 (41%), Gaps = 105/599 (17%)

Query: 167 DRSAPRVLLADEVGLGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQ 226
           D +   +L+AD+VGLGKTIEAGLVI   LL  R   VL++ P +LQ +W +EM  +F L 
Sbjct: 161 DMARVNLLIADDVGLGKTIEAGLVIQEMLLRHRVRTVLVICPASLQEKWRIEMLEKFGLD 220

Query: 227 VALFDAE--RFIESDAS---NPFEDAQLALVALEWLVDDE---KAQDAL-FAAG----WD 273
             + D    + +  D     NP+      + +++W    E     +D L   AG    +D
Sbjct: 221 FCVVDTAYIKQLRRDRGIHVNPWTSHPRLIASMDWAKSGEGLRAMRDVLPLLAGHPRKFD 280

Query: 274 LLVVDEAHHLVWHEDQVSAEYGLVEQLAQVIPGV-------LLLTATPE----------- 315
           LLVVDEAH++        A Y L  Q  + I  +       L LTATP            
Sbjct: 281 LLVVDEAHNIA---PAAGAHYALESQRTRFIRSISPHFQHRLFLTATPHNGYTESFTSLL 337

Query: 316 QLGQDSHFARLRLLDPNRFHDLAAFRAESE----------HYRPVAEAVQELLDEGRLSP 365
           +L  D  FAR  L D  +   +   R +S+            R +   V    DE R   
Sbjct: 338 ELLDDQRFARNILPDEKQLSQVMIRRLKSDLVDAEGKPLYAQRKLQALVIPYTDEER--- 394

Query: 366 KAHATILGFLGAEGEALLAAVSDGDTQASARLIRE-----------LLDRHGTGRVLFRN 414
           K H  +  +  +  +    A S   T    +L+++            L++H     +   
Sbjct: 395 KIHQKLNDYCASREKDAEKAGSTFGTSFINQLLKKRLFSSPAAFASTLEKHIAS--IANG 452

Query: 415 TRAAIQ-GFPERQLHPYPLPTPEQYRD--------LPAGEHAELYPEVAFQAQGEVADDE 465
            R  +Q    ER L    L   E Y +          A E A  + +     Q  + +D 
Sbjct: 453 ARPKVQDAMAERILRKAILKVDEDYANDQEVENAQSEAVEEASRHTQPLTPEQQLLLNDL 512

Query: 466 RWW------RFDPRVDWLIDTLKMLKR-------TKVLVICAHAETAMDLEDALRVR--S 510
           R W      + D +   +I+ L+   R        +V++   +  T   + + L      
Sbjct: 513 RQWAQRAKNQTDSKARAIIEWLEANLRPDGEWSDRRVILFTEYRTTHSWMHEILASHGFG 572

Query: 511 GIPASVFHEGMSILERD--RAAAYFADEEFGAQVLICSEIGSEGRNFQ-FAHHLVMFDLP 567
           G    + H G++  ER+  +AA   + ++   ++L+ ++  SEG + Q   + L+  ++P
Sbjct: 573 GERLGLLHGGLTQEEREPIKAAFQASPKDSPVRILLATDAASEGIDLQNHCNCLIHLEIP 632

Query: 568 AHPDLLEQRIGRLDRIGQK-HTIQLHIPYLQDSPQERLFQWYHEGLNAFLNTCPTGNALQ 626
            +P+++EQR GR+DR GQ+ + + +  P             + E +   L    +  A  
Sbjct: 633 YNPNVMEQRNGRIDRHGQRENEVLIWHPVDGGDKSREPVGGHGEDILRALRKLESMRADM 692

Query: 627 HQFGPRLLPLLEG---GENKAWDTLVADA---------RSERERLE--AELHTGRDRLL 671
               P + P + G   G  K  DT +A+A         R+ERE  E  A+LH   +RLL
Sbjct: 693 GSVNPVIAPQMSGLIEGSLKDLDTRLAEAKIAKARRFVRAERELKERVAKLH---ERLL 748