Pairwise Alignments

Query, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas putida KT2440

Subject, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas simiae WCS417

 Score = 1693 bits (4385), Expect = 0.0
 Identities = 837/948 (88%), Positives = 898/948 (94%)

Query: 1   MAQQYQPGQRWISDSEAELGLGTILAQDGRLLTVLYPATGDTRQYSLRNAPLTRVRFSPG 60
           MAQQYQPGQRWISDSEAELGLGT+LAQDGRLLTVLYPATGDTRQY+LRNAPLTRVRFSPG
Sbjct: 1   MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPG 60

Query: 61  DQITHFEGWKLTVREVEDIDGLMVYHGLDGQNQPRTLPETQLSNFIQFRLASDRLFAGQI 120
           D ITHFEGWK+TV+EV+D+DGL+VYHGL+GQN+  TLPETQLSNFIQFRLASDRLFAGQI
Sbjct: 61  DSITHFEGWKMTVQEVDDVDGLLVYHGLNGQNEQVTLPETQLSNFIQFRLASDRLFAGQI 120

Query: 121 DPLSWFSLRYNTLQHTSKQMQSALWGLGGCRAQPIAHQLHIAREVADRSAPRVLLADEVG 180
           DPL+WFSLRY+TL+HTS+Q+QS+LWGLGG RAQPIAHQLHIAREVADR APRVLLADEVG
Sbjct: 121 DPLAWFSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG 180

Query: 181 LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIESDA 240
           LGKTIEAGLVIHRQLLSGRA+RVLILVPENLQHQWLVEMRRRFNLQVALFD ERFIESDA
Sbjct: 181 LGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA 240

Query: 241 SNPFEDAQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDQVSAEYGLVEQL 300
           +NPFED QLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHED+VS EY LVEQL
Sbjct: 241 TNPFEDTQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDKVSPEYALVEQL 300

Query: 301 AQVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYRPVAEAVQELLDE 360
           A+VIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDL AFRAESE+YRPVAEAVQELLD+
Sbjct: 301 AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLQAFRAESENYRPVAEAVQELLDK 360

Query: 361 GRLSPKAHATILGFLGAEGEALLAAVSDGDTQASARLIRELLDRHGTGRVLFRNTRAAIQ 420
           GRLSP AH TI GFLG EGEALL AV+DGDT+ASARL+RELLDRHGTGRVLFRNTRAA+Q
Sbjct: 361 GRLSPAAHKTIQGFLGNEGEALLTAVNDGDTEASARLVRELLDRHGTGRVLFRNTRAAVQ 420

Query: 421 GFPERQLHPYPLPTPEQYRDLPAGEHAELYPEVAFQAQGEVADDERWWRFDPRVDWLIDT 480
           GFPER+LH YPLP P++Y +LP GEHAELYPEV+FQ+Q ++ ++ RWWRFDPRV+WLID 
Sbjct: 421 GFPERKLHAYPLPNPDEYLELPLGEHAELYPEVSFQSQPDIEEENRWWRFDPRVEWLIDQ 480

Query: 481 LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPASVFHEGMSILERDRAAAYFADEEFGA 540
           LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPA+VFHEGM+ILERDRAAAYFADEEFGA
Sbjct: 481 LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA 540

Query: 541 QVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRIGQKHTIQLHIPYLQDSP 600
           QVLICSEIGSEGRNFQF+HHLV+FDLP+HPDLLEQRIGRLDRIGQKH I+LH+PYL+ SP
Sbjct: 541 QVLICSEIGSEGRNFQFSHHLVLFDLPSHPDLLEQRIGRLDRIGQKHVIELHVPYLETSP 600

Query: 601 QERLFQWYHEGLNAFLNTCPTGNALQHQFGPRLLPLLEGGENKAWDTLVADARSERERLE 660
           QERLFQWYHE LNAFLNTCPTGNALQHQFGPRLLPLLE  ++  W  L+ +AR+ERERLE
Sbjct: 601 QERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLENADDGEWQALIDEARAERERLE 660

Query: 661 AELHTGRDRLLELNSGGAGEGQALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENAL 720
            ELHTGRDRLLELNSGGAGEG ALVE ILEQDDQFALPIYMETLFDAFGIDSEDHSENAL
Sbjct: 661 EELHTGRDRLLELNSGGAGEGDALVEDILEQDDQFALPIYMETLFDAFGIDSEDHSENAL 720

Query: 721 ILKPSEKMLDASFPLGDDEGVTITYDRGQALSREDMQFLTWEHPMVQGGMDLVLSGSMGN 780
           ILKPSEKMLDASFPLGDDEGVTITYDR QALSREDMQF+TWEHPMVQGGMDLVLSGSMGN
Sbjct: 721 ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN 780

Query: 781 TAVALIKNKALKPGTVLLELLFVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLASRVAF 840
           TAVALIKNKALKPGTVLLELL+VSEVVAPRSLQLGRYLPPAALRCLLDANGNDL+SRV+F
Sbjct: 781 TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSSRVSF 840

Query: 841 ETLNDQLESVPRASANKFVQAQRDVLAKRISGGEEKILPAHNERVAEAQRRLAAEADEEL 900
            TLNDQLESVPRASANKF+QAQRD L  RI+ GEEKI P H ERVAEA+RRLAA+ DEEL
Sbjct: 841 VTLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKITPQHAERVAEAKRRLAADTDEEL 900

Query: 901 ARLVALQAVNPSVRDSEIDALRKRREDGLAMLEKAALRLEAIRVLVAG 948
           ARL ALQAVNP+VRDSE+ ALR +RE GLAML+KAALRLEAIRVLVAG
Sbjct: 901 ARLTALQAVNPTVRDSELVALRTQREQGLAMLDKAALRLEAIRVLVAG 948