Pairwise Alignments

Query, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas putida KT2440

Subject, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas putida KT2440

 Score = 1878 bits (4865), Expect = 0.0
 Identities = 948/948 (100%), Positives = 948/948 (100%)

Query: 1   MAQQYQPGQRWISDSEAELGLGTILAQDGRLLTVLYPATGDTRQYSLRNAPLTRVRFSPG 60
           MAQQYQPGQRWISDSEAELGLGTILAQDGRLLTVLYPATGDTRQYSLRNAPLTRVRFSPG
Sbjct: 1   MAQQYQPGQRWISDSEAELGLGTILAQDGRLLTVLYPATGDTRQYSLRNAPLTRVRFSPG 60

Query: 61  DQITHFEGWKLTVREVEDIDGLMVYHGLDGQNQPRTLPETQLSNFIQFRLASDRLFAGQI 120
           DQITHFEGWKLTVREVEDIDGLMVYHGLDGQNQPRTLPETQLSNFIQFRLASDRLFAGQI
Sbjct: 61  DQITHFEGWKLTVREVEDIDGLMVYHGLDGQNQPRTLPETQLSNFIQFRLASDRLFAGQI 120

Query: 121 DPLSWFSLRYNTLQHTSKQMQSALWGLGGCRAQPIAHQLHIAREVADRSAPRVLLADEVG 180
           DPLSWFSLRYNTLQHTSKQMQSALWGLGGCRAQPIAHQLHIAREVADRSAPRVLLADEVG
Sbjct: 121 DPLSWFSLRYNTLQHTSKQMQSALWGLGGCRAQPIAHQLHIAREVADRSAPRVLLADEVG 180

Query: 181 LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIESDA 240
           LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIESDA
Sbjct: 181 LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIESDA 240

Query: 241 SNPFEDAQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDQVSAEYGLVEQL 300
           SNPFEDAQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDQVSAEYGLVEQL
Sbjct: 241 SNPFEDAQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDQVSAEYGLVEQL 300

Query: 301 AQVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYRPVAEAVQELLDE 360
           AQVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYRPVAEAVQELLDE
Sbjct: 301 AQVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYRPVAEAVQELLDE 360

Query: 361 GRLSPKAHATILGFLGAEGEALLAAVSDGDTQASARLIRELLDRHGTGRVLFRNTRAAIQ 420
           GRLSPKAHATILGFLGAEGEALLAAVSDGDTQASARLIRELLDRHGTGRVLFRNTRAAIQ
Sbjct: 361 GRLSPKAHATILGFLGAEGEALLAAVSDGDTQASARLIRELLDRHGTGRVLFRNTRAAIQ 420

Query: 421 GFPERQLHPYPLPTPEQYRDLPAGEHAELYPEVAFQAQGEVADDERWWRFDPRVDWLIDT 480
           GFPERQLHPYPLPTPEQYRDLPAGEHAELYPEVAFQAQGEVADDERWWRFDPRVDWLIDT
Sbjct: 421 GFPERQLHPYPLPTPEQYRDLPAGEHAELYPEVAFQAQGEVADDERWWRFDPRVDWLIDT 480

Query: 481 LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPASVFHEGMSILERDRAAAYFADEEFGA 540
           LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPASVFHEGMSILERDRAAAYFADEEFGA
Sbjct: 481 LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPASVFHEGMSILERDRAAAYFADEEFGA 540

Query: 541 QVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRIGQKHTIQLHIPYLQDSP 600
           QVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRIGQKHTIQLHIPYLQDSP
Sbjct: 541 QVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRIGQKHTIQLHIPYLQDSP 600

Query: 601 QERLFQWYHEGLNAFLNTCPTGNALQHQFGPRLLPLLEGGENKAWDTLVADARSERERLE 660
           QERLFQWYHEGLNAFLNTCPTGNALQHQFGPRLLPLLEGGENKAWDTLVADARSERERLE
Sbjct: 601 QERLFQWYHEGLNAFLNTCPTGNALQHQFGPRLLPLLEGGENKAWDTLVADARSERERLE 660

Query: 661 AELHTGRDRLLELNSGGAGEGQALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENAL 720
           AELHTGRDRLLELNSGGAGEGQALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENAL
Sbjct: 661 AELHTGRDRLLELNSGGAGEGQALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENAL 720

Query: 721 ILKPSEKMLDASFPLGDDEGVTITYDRGQALSREDMQFLTWEHPMVQGGMDLVLSGSMGN 780
           ILKPSEKMLDASFPLGDDEGVTITYDRGQALSREDMQFLTWEHPMVQGGMDLVLSGSMGN
Sbjct: 721 ILKPSEKMLDASFPLGDDEGVTITYDRGQALSREDMQFLTWEHPMVQGGMDLVLSGSMGN 780

Query: 781 TAVALIKNKALKPGTVLLELLFVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLASRVAF 840
           TAVALIKNKALKPGTVLLELLFVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLASRVAF
Sbjct: 781 TAVALIKNKALKPGTVLLELLFVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLASRVAF 840

Query: 841 ETLNDQLESVPRASANKFVQAQRDVLAKRISGGEEKILPAHNERVAEAQRRLAAEADEEL 900
           ETLNDQLESVPRASANKFVQAQRDVLAKRISGGEEKILPAHNERVAEAQRRLAAEADEEL
Sbjct: 841 ETLNDQLESVPRASANKFVQAQRDVLAKRISGGEEKILPAHNERVAEAQRRLAAEADEEL 900

Query: 901 ARLVALQAVNPSVRDSEIDALRKRREDGLAMLEKAALRLEAIRVLVAG 948
           ARLVALQAVNPSVRDSEIDALRKRREDGLAMLEKAALRLEAIRVLVAG
Sbjct: 901 ARLVALQAVNPSVRDSEIDALRKRREDGLAMLEKAALRLEAIRVLVAG 948