Pairwise Alignments

Query, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas putida KT2440

Subject, 981 a.a., RNA polymerase-associated protein RapA from Dickeya dianthicola ME23

 Score =  935 bits (2417), Expect = 0.0
 Identities = 509/974 (52%), Positives = 657/974 (67%), Gaps = 37/974 (3%)

Query: 8   GQRWISDSEAELGLGTILAQDGRLLTVLYPATGDTRQYSLRNAPLTRVRFSPGDQITHFE 67
           GQRWISD+E++LGLGT++A D R++T+L+PA+G+ R YS  +AP+TRV F+PGD IT  E
Sbjct: 6   GQRWISDTESDLGLGTVVAMDARMVTLLFPASGENRLYSRNDAPITRVMFNPGDTITSHE 65

Query: 68  GWKLTVREVEDIDGLMVYHG---------LD--GQ----NQPRTLPETQLSNFIQFRLAS 112
           GW+L V +V D +GL  Y G         LD  GQ    ++P  L E  L + + F    
Sbjct: 66  GWQLRVEDVHDENGLRTYIGQRLDAIGQQLDTIGQQLDTDEPTELREVFLDSKLTFNKPQ 125

Query: 113 DRLFAGQIDPLSWFSLRYNTLQHTSKQMQSALWGLGGCRAQPIAHQLHIAREVADRSAPR 172
           DRLFAGQID +  F+LRY   +H  +Q      GL G RA  I HQLHIAREV  R APR
Sbjct: 126 DRLFAGQIDRMDRFALRYRAHRHQLEQALQPWGGLRGMRASLIPHQLHIAREVGQRHAPR 185

Query: 173 VLLADEVGLGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDA 232
           VLLADEVGLGKTIEAG++IH+QLL+GRA RVLI+VPE LQHQWLVEM RRFNL  +LFD 
Sbjct: 186 VLLADEVGLGKTIEAGMIIHQQLLAGRAERVLIVVPETLQHQWLVEMLRRFNLLFSLFDD 245

Query: 233 ERFIES--DASNPFEDAQLALVALEWLVDDEKAQDALFAAGWDLLVVDEAHHLVWHEDQV 290
           ER+ E+  D+ NPFE  QL + +L+++  +    + L  A WDLLVVDEAHHLVW E   
Sbjct: 246 ERYAEARLDSDNPFETEQLIICSLDFVRRNPSRFEQLLDADWDLLVVDEAHHLVWSEAAP 305

Query: 291 SAEYGLVEQLAQVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESEHYRPV 350
           SA Y  +E LA+ IP VLLLTATPEQLGQ+SHFARLRLLDPNRFHD   F AE + YRPV
Sbjct: 306 SAGYKAIECLARAIPAVLLLTATPEQLGQESHFARLRLLDPNRFHDYHEFIAEQQQYRPV 365

Query: 351 AEAVQELLDEGRLSPKAHATILGFLGAEG-EALLAAV-SDGDTQASAR--LIRELLDRHG 406
           A+AV  LL   R++      +   LG +  E LL ++ SD +  A+AR  LI  L+DRHG
Sbjct: 366 ADAVTLLLSGNRINDSERNALGDMLGEQDIEPLLKSIASDSEDSAAARQELITMLMDRHG 425

Query: 407 TGRVLFRNTRAAIQGFPERQLHPYPLPTPEQYRD-------LPAGEHAE------LYPEV 453
           T RVLFRNTR  ++GFP+R+LH   LP P QY+        +   + AE      LYPE 
Sbjct: 426 TSRVLFRNTRQGVKGFPKRELHQIKLPLPTQYQTAIRVSGIMNTRKSAEDCARDMLYPEQ 485

Query: 454 AFQAQGEVADDERWWRFDPRVDWLIDTLKMLKRTKVLVICAHAETAMDLEDALRVRSGIP 513
            +Q   +  D+  WW FDPRV+W++D L   +  KVLVICA A TA+ LE  LR R  I 
Sbjct: 486 IYQQFED--DNATWWSFDPRVEWMLDFLTSHRDEKVLVICAKAATALQLEQVLRTREAIR 543

Query: 514 ASVFHEGMSILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLL 573
           A+VFHEG+SILERDRAAAYFA EE GAQVLICSEIGSEGRNFQFA HL+MFDLP +PDLL
Sbjct: 544 AAVFHEGLSILERDRAAAYFASEEEGAQVLICSEIGSEGRNFQFASHLIMFDLPFNPDLL 603

Query: 574 EQRIGRLDRIGQKHTIQLHIPYLQDSPQERLFQWYHEGLNAFLNTCPTGNALQHQFGPRL 633
           EQRIGRLDRIGQ   IQ+ +PYL+++ Q  L +WYHEGL+AF +TCPTG ++      + 
Sbjct: 604 EQRIGRLDRIGQSRDIQILVPYLENTAQALLVRWYHEGLDAFEHTCPTGRSIYDSHYEQF 663

Query: 634 LPLL-EGGENKAWDTLVADARSERERLEAELHTGRDRLLELNSGGAGEGQALVEAILEQD 692
           + LL +  E    D  +   R + + L+ +L  GRDRLLE++S G  + QAL EAI  QD
Sbjct: 664 INLLAKPSEQTGLDEFIHACRQQHDALKTQLEQGRDRLLEMHSNGGEQAQALAEAIARQD 723

Query: 693 DQFALPIYMETLFDAFGIDSEDHSENALILKPSEKMLDASFPLGDDEGVTITYDRGQALS 752
           +   L  +   LFD  GI  +D S+N ++L PSE ML   FP    +G TIT+DR QALS
Sbjct: 724 NDVNLVNFALNLFDIIGIHQDDRSDNLIVLTPSEHMLVPDFPGLPQDGCTITFDRDQALS 783

Query: 753 REDMQFLTWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELLFVSEVVAPRSL 812
           RED QF++WEHP+++ G+DL+LSG  G+ AV+L+KNKAL  GT+L EL++V E  AP+ L
Sbjct: 784 REDAQFVSWEHPLIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKKL 843

Query: 813 QLGRYLPPAALRCLLDANGNDLASRVAFETLNDQLESVPRASANKFVQAQRDVLAKRISG 872
           QL R+LPP  +R LLD  G +LA++V FE+ N QL +V R +++K V A +D +   +  
Sbjct: 844 QLTRFLPPTPIRILLDRKGANLAAQVEFESFNRQLSAVNRHTSSKLVNAVQDDVHDMLQK 903

Query: 873 GEEKILPAHNERVAEAQRRLAAEADEELARLVALQAVNPSVRDSEIDALRKRREDGLAML 932
            +  +     E +A+AQR    +   E  RL AL+AVNP++RD E++AL ++RE  L  L
Sbjct: 904 AQPLVEAQAQELIADAQRNAETQLRREQERLEALKAVNPNIRDDELEALEEQREQVLLNL 963

Query: 933 EKAALRLEAIRVLV 946
           ++A  RL+AIR+++
Sbjct: 964 QQANWRLDAIRLVM 977