Pairwise Alignments

Query, 948 a.a., RNA polymerase-associated protein RapA from Pseudomonas putida KT2440

Subject, 632 a.a., DEAD/DEAH box helicase from Brevundimonas sp. GW460-12-10-14-LB2

 Score = 49.7 bits (117), Expect = 6e-10
 Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 13/225 (5%)

Query: 477 LIDTLKMLKRTKVLVICAHAETAMDLEDALRVRSGIPASVFHEGMSILERDRAAAYFADE 536
           +++TL+  +  + +V C+  ++   L+ +L  R     S+  E   + +R+R  A  +  
Sbjct: 234 VVNTLRWFEAPRAMVFCSTRDSVRHLQSSLLERGFSTVSLSGE---MGQRERTDALQSLR 290

Query: 537 EFGAQVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRIGQKHTIQLHIPYL 596
           +  A+V + +++ + G +      ++  +LP +   L  R GR  R G+K    + +P+ 
Sbjct: 291 DGRARVCVATDVAARGLDLPDLGLVIHAELPMNRAGLLHRSGRTGRAGKKGISVMLVPHS 350

Query: 597 QDSPQERLFQWYHEGLNAFLNTCPTGNALQHQFGPRLLPLLEGGENKAWDTLVADARSER 656
           +    ERL      G++A     PT + ++     RLL       + + + +V   R   
Sbjct: 351 RRRKAERLMD--EAGVDAVWTGAPTFDEIRKADEGRLLSPEFFEADVSDEDMVVAKRMIA 408

Query: 657 ERLEAELHTGRDRLL--------ELNSGGAGEGQALVEAILEQDD 693
           ER   E+     RLL        EL+  G+  G A  E  +  DD
Sbjct: 409 ERTPDEIAAALVRLLRKEQPAPEELSDPGSDRGPAKRERTVRNDD 453