Pairwise Alignments

Query, 371 a.a., branched-chain amino acids ABC transporter - periplasmic leucine binding subunit from Pseudomonas putida KT2440

Subject, 388 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  157 bits (398), Expect = 4e-43
 Identities = 109/348 (31%), Positives = 170/348 (48%), Gaps = 7/348 (2%)

Query: 7   LFAAMVLAGVASHSFAAD-TIKIGIAGPKTGPVTQYGDMQFIGAKQAIKDINAAGGVDGK 65
           L  A  LAG A  +FA   T +IG     TGP    G+     A+ A++ IN AGGV+GK
Sbjct: 14  LACAAGLAGFAGGAFAQGATTRIGFQAGLTGPAAADGNAGLAAARLAVEQINGAGGVNGK 73

Query: 66  MLEAKEYDDACDPKQAVAVANKVVNDGVKFVVGHLCSSSTQPASDIYEDEGVIMITPAAT 125
            LE   YDD   P+QAV +AN++V DGV+ VV    S  ++ A+ +++   +  I   A 
Sbjct: 74  KLELVVYDDQGKPEQAVPIANRMVGDGVRAVVSAGFSGPSRAAAPVFQRAKIPYIAAIAF 133

Query: 126 SPEITARGYKLIFRTIGLDSAQGPAAGNYIADHVKPKVVAVLHDKQQYGEGIATAVKQTL 185
           +PEIT  G   +FR   +   QG AA   + D +  K   +L  K  +G+ +A   K+  
Sbjct: 134 APEITRTG-NYMFRVTSVGEVQGRAAAKLMGDVLHKKRAVLLTIKTDFGKTLAAGFKEAA 192

Query: 186 ESKGTKVAVFEGLNAGDKDFSSIIQKLKQNNVDFVYYGGYHPELGLILRQAQEKGLKAKF 245
              G ++         D+ F  +I  +K +N D +Y  G++   G ++ Q +  G+ A  
Sbjct: 193 PKFGVQLLKEYEYAPSDRQFGPLIASIKADNPDVIYATGFYFTAGPLVAQLRSAGVTADV 252

Query: 246 MGPEGVGNDSISQIAQNASEGLLVTLPKSFDADPANKKIVDAIKADGKDPSGPFVFPA-- 303
           +G E + +     IA  A+EG ++T     D      +I D +KA  K  +      A  
Sbjct: 253 VGAESLSSQQYIDIAGQAAEGTVIT--NVIDWGSQLPEIADFLKAYEKATNSKAEAAATS 310

Query: 304 -YSAVELIAQGIKKAGSDDTDKVAEAIHKGTFKTPTGDLSFDDKGDLK 350
            ++AV  +A  I+KA SDD DK+  A+      T  G +SF+   ++K
Sbjct: 311 THAAVVALAAAIRKAKSDDPDKIRAALETLDVTTAIGRISFNKLHEVK 358