Pairwise Alignments

Query, 371 a.a., branched-chain amino acids ABC transporter - periplasmic leucine binding subunit from Pseudomonas putida KT2440

Subject, 400 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score = 97.4 bits (241), Expect = 6e-25
 Identities = 85/321 (26%), Positives = 145/321 (45%), Gaps = 12/321 (3%)

Query: 25  TIKIGIAGPKTGPVTQYGDMQFIGAKQAIKDINAAGGV---DGKMLEAKEYDDACDPKQA 81
           T+K+G+  P TG +   G    +GA  AI+DINAAGG+    G  LEA   D    P+  
Sbjct: 30  TVKVGVLHPVTGALAYSGQQCRLGALMAIEDINAAGGIKSLGGAKLEALLGDAQSQPQAG 89

Query: 82  VAVANKVVNDGVKFVVGHLCSSSTQPASDIYEDEGVIMITPAATSPEITARGYKLIFR-T 140
            A   K+   GV  +VG   S+     +       +  +     + +I  RG K  FR  
Sbjct: 90  AAEVEKMNEAGVSAIVGAFASAICLATTQAAAKYNLPHVVDVGVADQIVERGLKNTFRFG 149

Query: 141 IGLDSAQGPAAGNYI----ADHVKPKVVAVLHDKQQYGEGIATAVKQTLESKGTKVAVFE 196
            G   +   A  N +    A     K V V+H++  +G G A  + + L   G +V    
Sbjct: 150 PGYKKSTEVAMANLLVLNKAAGSPAKTVMVIHEESLFGAGTAQLLSRELPGYGFEVKEVV 209

Query: 197 GLNAGDKDFSSIIQKLKQNNVDFVYYGGYHPELGLILRQAQEKGL--KAKFMGPEGVGND 254
                 +DF++I+ ++K  N D V    Y+ E  L++R  Q++ +  KA F    G  + 
Sbjct: 210 KHANPTRDFNNIVLRMKSVNPDIVIPANYYNEYALLVRTMQQQKVVPKAIFSVLGGAASS 269

Query: 255 -SISQIAQNASEGLLVTLPKSFDADPANKKIVDAIKADGKDPSGPFVFPAYSAVELIAQG 313
               +   +A+ G++         D  ++++   ++A G+  S   VF  Y+++ L+A  
Sbjct: 270 YKFVKEFPDAANGIIDCNHWFNPKDKRSQELRKRVEAKGQFFSYE-VFMTYTSMWLLADA 328

Query: 314 IKKAGSDDTDKVAEAIHKGTF 334
           I++A S +   + +A+ K TF
Sbjct: 329 IERAKSTERAAIIDALEKSTF 349