Pairwise Alignments

Query, 338 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

Subject, 330 a.a., mRNA 3-end processing factor from Sphingobium sp. HT1-2

 Score =  241 bits (615), Expect = 2e-68
 Identities = 139/326 (42%), Positives = 187/326 (57%), Gaps = 10/326 (3%)

Query: 8   PEGLYCPPGDFYIDPWRPVERAVITHGHGDHARTGNGHYLTASPGAGILRSRLGQDINLQ 67
           P G+Y  P D +IDP +P ERA++THGH DHAR G+GH         I+  R G      
Sbjct: 9   PTGIYVRPSDAWIDPSQPQERALVTHGHADHARGGHGHVWATRETLAIMALRYGTASGT- 67

Query: 68  TLPYGERLLHHGVTLSLHPAGHVLGSAQVRLEYRGEVWVASGDYKVEPDGTCTPFEPVAC 127
            + YGE +   GVT+   PAGHVLGSAQ+ L++ GE  V +GDYK  PD TC PFEPV C
Sbjct: 68  AVGYGEEIRLGGVTIRYVPAGHVLGSAQIILDHAGERVVVTGDYKRRPDPTCLPFEPVPC 127

Query: 128 HTFITESTFGLPIYRWP-SQSEIFASINAWWRANSEQGKASVLFCYAFGKAQRILHGLDA 186
             F+TE+TFGLP++R P + SE+   ++A    ++   +  ++  YA GKAQR++  L A
Sbjct: 128 DIFVTEATFGLPVFRHPDTGSEMDRLLHA---LHANPDRCVLVGAYALGKAQRVICELRA 184

Query: 187 --SIGPILVHGAMEPLNRVYRDAGIRLPETRYAGDIPRNDPLLRQALVLAPPSAGGSSWM 244
                PI +HGA+E +  +Y+D G+ + + R A  +P  D  LR A+VLAPPSA    W 
Sbjct: 185 RGHHDPIYIHGALERMCALYQDFGVDMGKLRGATGVPAKD--LRGAIVLAPPSALNDRWS 242

Query: 245 RRFGDYSDAFASGWMLLRGARRRRGVDRGFVLSDHADWPGLLWAIGQTGAQRVMVTHGSV 304
           RR  D   A ASGWM +R   R+R V+   V+SDHADW  L   I +       +THG  
Sbjct: 243 RRLPDPIAAMASGWMRVRQRARQRNVELPLVISDHADWDELTDTIREVAPSETWITHGRE 302

Query: 305 EVLVRYLTEQGLDARAFVTEYGDEDD 330
           E L+ +       ARA     G ED+
Sbjct: 303 EALLHWCMTHQYRARALAL-VGREDE 327