Pairwise Alignments

Query, 552 a.a., putative DNA ligase, ATP-dependent from Pseudomonas putida KT2440

Subject, 845 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Variovorax sp. SCN45

 Score = 58.5 bits (140), Expect = 1e-12
 Identities = 57/190 (30%), Positives = 79/190 (41%), Gaps = 21/190 (11%)

Query: 232 PSDWQIEWKWDGIRAQVVKRDGQLWVWSRGEELVTERFPEL-HGLAQTLPDGVVLDGEIL 290
           P DW  E K+DG R       G++  ++R     T + P L   LA+       LDGEI 
Sbjct: 239 PGDWLYELKFDGYRLLARIDKGKVRCFTRNGHDWTAKLPALAEALAKLSTGAAWLDGEIT 298

Query: 291 VWKPGETETELAVQPFALLQQRIGRKTLGKKLLNDAPVVLQAYDLLEWQGEDWRSRPQHE 350
           V      E E     F  LQ    R          + +V   +D     GED R  P  E
Sbjct: 299 V------EGENGAPDFQALQNAFDRGAT-------SAIVYWLFDAPFLDGEDLRELPVEE 345

Query: 351 RRSQLEHLVDEHPLAPVLLSPLLQGPDWADLARQREQSRSLGVEGLMLKQREALYGVGRT 410
           RR++L  L+ + P AP+ LS          LA     S  +G EG++ K++ + Y   R+
Sbjct: 346 RRARLAKLLGKKPPAPLRLSEAFDAAPRDLLA----SSARIGFEGIVCKRKGSPYVPRRS 401

Query: 411 KDMGIWWKWK 420
            D   W K K
Sbjct: 402 PD---WIKLK 408