Pairwise Alignments

Query, 552 a.a., putative DNA ligase, ATP-dependent from Pseudomonas putida KT2440

Subject, 541 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

 Score =  321 bits (823), Expect = 4e-92
 Identities = 216/559 (38%), Positives = 301/559 (53%), Gaps = 31/559 (5%)

Query: 1   MKAFATLFLRLDATTSSNAKLEALRDYFDMAPAEDAAWAVYFLAGGRPRQLVPTRLLREL 60
           MKAFATL  RL  T S N KL+ L DYF   P  D  + +  +AG    + V   +LREL
Sbjct: 1   MKAFATLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLDLKSVKPAMLREL 60

Query: 61  ATTLAGLPDWLFEESYQAVGDLAETISLLLP-LHADGNEEGLATWVEQHLLPLRGLTPEQ 119
              +  + + LF  SY  VGDLAETISL+   +    + E     + + +  +  L   +
Sbjct: 61  V--MERMDEVLFRYSYDYVGDLAETISLVWGNIGGVDDAEAQDPRLGEVVTLMNSLGRTE 118

Query: 120 VRQRLPPLWARLDRASLMLCLKLITGSFRVGVSKLLVTRALAQLAGLDAKRVAQRLVGYT 179
           VR  +  L  RLD +S    LKL TGS R+GVS  L  +ALA  A  D   +     G T
Sbjct: 119 VRGAVRDLLDRLDTSSRFAFLKLATGSLRIGVSARLARQALADFADKDITEIETLWHGLT 178

Query: 180 DIGHRPTAASYQRLIAPESADEHNQRGGQPYPF---FLAHPLQVSSDQFDTLLGPPSDWQ 236
                     Y  L +    +        P  F    LA P  V+    D L   P+D+ 
Sbjct: 179 P--------PYTTLFSWLEGNSDRPLLATPAIFHSVMLATP--VADGDLDAL--DPADYA 226

Query: 237 IEWKWDGIRAQVVKRDGQLWVWSRGEELVTERFPELHGLAQTLPDGVVLDGEILVWKPGE 296
            EWKWDGIR Q+ +      ++SR  + ++  FP++      +    V+DGE+LV   G 
Sbjct: 227 AEWKWDGIRVQLSRAGETRKLYSRSGDDISGAFPDV---LDAIEFEGVMDGELLVG--GT 281

Query: 297 TETELAVQPFALLQQRIGRKTLGKKLLNDAPVVLQAYDLLEWQGEDWRSRPQHERRSQLE 356
             +    + F+ LQQR+ RKT+  K+ +D P  ++AYDLL     D R++   ERR++L 
Sbjct: 282 ARSNNLTRTFSDLQQRLNRKTVTAKMRDDYPAFIRAYDLLFEGESDIRAQTYLERRNRLS 341

Query: 357 HLVDEHPLAPVLLSPLLQGPDWADLARQREQSRSLGVEGLMLKQREALYGVGRTKDMGIW 416
            +++  P     LSPL+    W++L   R       +EG+M+K+R++ Y  GR K  G W
Sbjct: 342 DIIERAPHDRFDLSPLIGFSSWSELDTLRAAPPDPVIEGVMIKRRDSTYQAGRAK--GPW 399

Query: 417 WKWKIDPFSVDAVLIYAQRGHGRRASLYSDYTFAVWDAPAGTPGRALVPFAKAYSGLSDE 476
           +KWK DP+++DAV++YAQRGHG+R+S YSD+TF VW    G  G  LVP  KAY G +D 
Sbjct: 400 FKWKRDPYNIDAVMMYAQRGHGKRSSYYSDFTFGVW--AEGEDGEQLVPVGKAYFGFTDA 457

Query: 477 EMRKVDAIIRKTTVETFGPVRSVTPT----LVFELGFEGIALSRRHKSGIAVRFPRMLRW 532
           E+  +D  +R  TVE FGPVR+V  T     V E+ FEGI  S RHKSG+A+RFPR+ R 
Sbjct: 458 ELEVLDKFVRDNTVERFGPVRAVRATPDFGFVLEVAFEGINRSTRHKSGVAMRFPRIARL 517

Query: 533 RLDKPVEEADDLATLQALL 551
           R DK   EAD L+TL A++
Sbjct: 518 RADKLPAEADRLSTLVAMI 536