Pairwise Alignments

Query, 816 a.a., ATP-dependent helicase, DEAD box family from Pseudomonas putida KT2440

Subject, 1437 a.a., ATP-dependent RNA helicase SrmB from Pseudomonas sp. RS175

 Score =  197 bits (502), Expect = 3e-54
 Identities = 244/874 (27%), Positives = 364/874 (41%), Gaps = 124/874 (14%)

Query: 1   MPAATDLANAWF--AKRGWKPFAF------QRRVWAAVERGESGLLHASTGAGKTYAVWL 52
           +P A D A A F  A R W    F      Q R W  + +  S L+ A TG+GKT   +L
Sbjct: 3   LPLAADHAMAGFHPAVRAWFSQTFPAITAAQARAWPLIGQRRSTLVAAPTGSGKTLTAFL 62

Query: 53  AALRAFKPR--PQGRHLAPIQVLWVTPMRALAADTARALQAPL----------DELQLPW 100
           A L     R   QG  L    V++V+P++AL+ D    LQ PL          D   L  
Sbjct: 63  AVLDELVHRGLEQGGLLDQTLVVYVSPLKALSNDIRINLQNPLAGITEQLRRMDLPPLHI 122

Query: 101 SVGVRSGDTNSAERARQARRLPSVLITTPESLTLLLTRAKAREDFATLQLVVVDEWHELL 160
           +  VR+GDT   ER+   +  P +L+TTPESL +LL     R+  A+ + V+VDE H + 
Sbjct: 123 TTAVRTGDTPQKERSAMRKTAPHILVTTPESLYVLLGSDSGRQMLASTRTVIVDEIHAIA 182

Query: 161 GNKRGVQLQLALARLRHW-HPGLPTWGLSATLGNLQHARDVLLPQGGLLVQGRQDKALQV 219
            +KRG  L L+L RL+      L   GLSAT   ++     L+  G      R  + + +
Sbjct: 183 ASKRGSHLALSLERLQALCAEPLVRIGLSATQKPIEAVSRFLVGAG------RPCEIVDI 236

Query: 220 DTLLPK----AIERFPWAGHMGLKMLDQVCHEIDASA----SSLVFTNTRAQAEIWYQAL 271
               P+     +   P +  M   + + V + +   A    ++LVF NTR  AE   + L
Sbjct: 237 GHARPRDLGIEVPPVPLSAVMANDVWELVYNRLADLAREHRTTLVFVNTRRLAERLSRHL 296

Query: 272 LEARPDWAGLIALHHASLARDTRDWVERSLKQGSLKAVICTSSLDLGVDFLPVERVLQIG 331
            E     A  +A HH SLA++ R   E+ LK+G L+ +I T+SL+LG+D   V+ V QI 
Sbjct: 297 SERLGKDA--VAAHHGSLAKEFRLDAEQRLKRGELQVLIATASLELGIDIGDVDLVCQIA 354

Query: 332 SAKGIARLMQRAGRSGHAPGRRSRVTLVPTHSLELVEAAAARQALLAGHIEARFSPRLCM 391
           S + I+  +QR GRSGH  G   +  L  T   +L+E AA    +  G ++    P   +
Sbjct: 355 SPRSISAFLQRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDILHIPTAPL 414

Query: 392 DVLVQHLVSMALGSGFRPEQLLAEVRSTWAFRQLRDSQWQWALDFVCHGGSS----LTAY 447
           DVL Q +V+      ++ + LL   R    +  L +  +Q  L  +  G +      +AY
Sbjct: 415 DVLAQQIVAEVSCQEWQEQALLETFRRASPYAALDEGHYQALLQMLAEGVNGRQGVRSAY 474

Query: 448 PDYQRVERQADG-----VYRVTSERLARRHRMGIGTIVSDANLQLKYWSKGGGGKTLGSV 502
                V R   G     +  VTS           GTI  +A+  +   S+   G  +GSV
Sbjct: 475 LHRDAVSRTLRGRRGSKLTAVTSG----------GTIPDNADYSVLLESQ---GLNIGSV 521

Query: 503 EEAFIARLRPGDTLVFAGRVLELVRVENMTAYVRRSTARKAAVARWNGGRMPLSSELADA 562
            E F      GD          ++RVE     V  +  +   +  W G     S+EL+ A
Sbjct: 522 NEDFAVESIAGDVFQLGNTSYRIIRVETGRVRVEDAQGQPPTIPFWLGEAPGRSAELSMA 581

Query: 563 ---LVEQLD-----------------AAAHERFEGPEMRAVRPLLALQAQWSALPTTSTL 602
              L  QLD                     +  +    + V  L   +  + ALP+  TL
Sbjct: 582 VARLQAQLDRLLGATPGNLQPALDWLTGTLQLNQASAEQLVDYLAPARLAFGALPSQDTL 641

Query: 603 LAETFKSRQGWHLFLY--PFAGRMANLGLANLIAWRVSRAQPLSVSIAVNDYGFELLSPA 660
           L E F    G    +   PF  R+         AW ++  +          + FEL + A
Sbjct: 642 LMERFFDESGGTQLIIHSPFGSRINR-------AWGLALRKRF-----CRTFNFELQAAA 689

Query: 661 QVDWASHLPQALGTADLLEDVLASLN--AGEMAL-----------RRFREIAQIAGLVFG 707
             D A  L  +   +  L++V   LN  + E  L            R+R  A +A L   
Sbjct: 690 SED-AIVLSLSTSHSFELDEVWRYLNSQSAEQVLVQAVLDAPLFGVRWRWNAGVA-LALP 747

Query: 708 GYPAAQKSTRQIQ--ASSGLFYEVF------------RKHDAGNLLLGQARDEVLSEELE 753
            Y   +K   QIQ   S  L   VF             +    + L+ Q  D+ L E ++
Sbjct: 748 RYTGGRKVAPQIQRMKSEDLIASVFPDQIACLENLAGEREIPDHPLVEQTLDDCLHEAMD 807

Query: 754 IERLHRQLLKM--SELQLDLQALRRPGPLAFALL 785
            E     L +M   E++L  + L  P PLA  +L
Sbjct: 808 SEGWLTLLRRMEAGEIRLISRDLPAPSPLAAEIL 841