Pairwise Alignments

Query, 816 a.a., ATP-dependent helicase, DEAD box family from Pseudomonas putida KT2440

Subject, 1419 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens SBW25

 Score =  179 bits (454), Expect = 1e-48
 Identities = 226/856 (26%), Positives = 354/856 (41%), Gaps = 87/856 (10%)

Query: 1   MPAATDLA--------NAWFAKRGWKPFAFQRRVWAAVERGESGLLHASTGAGKTYAVWL 52
           +P +TD A        + WF          Q + W  + + +S L+ A TG+GKT   +L
Sbjct: 3   LPESTDTALTGFHPAVSTWFRSTFPSVTGAQAQAWPLIRQRQSTLIAAPTGSGKTLTAFL 62

Query: 53  AALR--AFKPRPQGRHLAP-IQVLWVTPMRALAADTARALQAPLDELQ----------LP 99
           A L     +    G  L     V++V+P++AL+ D    LQ PL  +           L 
Sbjct: 63  AVLDDLVHQGLANGGELPDETLVVYVSPLKALSNDIQINLQNPLAGITEHLRNLGLPPLA 122

Query: 100 WSVGVRSGDTNSAERARQARRLPSVLITTPESLTLLLTRAKAREDFATLQLVVVDEWHEL 159
               VR+GDT   +RA   +R P +L+TTPESL +LL     R+  A+ + V++DE H +
Sbjct: 123 IRTAVRTGDTPQKDRALMRKRPPHILVTTPESLYVLLGSDSGRQMLASTRTVIIDEIHAI 182

Query: 160 LGNKRGVQLQLALARLRHW-HPGLPTWGLSATLGNLQHARDVLLPQGGL--LVQGRQDKA 216
              KRG  L L+L RL+      L   GLSAT   +      L+  G    +V     + 
Sbjct: 183 AAGKRGSHLALSLERLQGLCAEPLMRIGLSATQKPIDAVSRFLVGSGRACAIVDIGHARP 242

Query: 217 LQVDTLLPKAIERFPWAGHMGLKMLDQVCHEIDASASSLVFTNTRAQAEIWYQALLEARP 276
             +D  +P        A  +  ++ D++        ++L+F NTR  AE   + L E   
Sbjct: 243 RDLDIEVPPVPLSAVMANDVWERVYDRLAELAREHRTTLIFVNTRRLAERLARHLSERLG 302

Query: 277 DWAGLIALHHASLARDTRDWVERSLKQGSLKAVICTSSLDLGVDFLPVERVLQIGSAKGI 336
             A  +A HH SLA++ R   E+ LK G L+ +I T+SL+LG+D   V+ V QIGS   I
Sbjct: 303 KTA--VAAHHGSLAKEMRLDAEQRLKGGELQVLIATASLELGIDIGDVDLVCQIGSPGSI 360

Query: 337 ARLMQRAGRSGHAPGRRSRVTLVPTHSLELVEAAAARQALLAGHIEARFSPRLCMDVLVQ 396
              +QR GRS H  G   +  L  T   +L+E AA    +  G ++    P   +DVL Q
Sbjct: 361 NGFLQRVGRSRHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDTLQIPVAPLDVLAQ 420

Query: 397 HLVSMALGSGFRPEQLLAEVRSTWAFRQLRDSQWQWALDFVCHGGSSL----TAYPDYQR 452
            +++      +  + LLA +     +  L +  +Q  L  +  G +      +AY     
Sbjct: 421 QIIAEVSAQEWSEQALLALIHRAAPYATLDERHYQALLQMLSDGYNGRQGIRSAYLHRDA 480

Query: 453 VERQADG-----VYRVTSERLARRHRMGIGTIVSDANLQLKYWSKGGGGKTLGSVEEAFI 507
           + R   G     +  VTS           GTI  +A+  +    +      +GSV E F 
Sbjct: 481 LTRTLRGRRGAKLTAVTSG----------GTIPDNADYSVLLEPQS---LNIGSVNEDFA 527

Query: 508 ARLRPGDTLVFAGRVLELVRVENMTAYVRRSTARKAAVARWNGGRMPLSSELADALVE-- 565
                GD          ++RVE     V  +  +   +  W G     S EL+ A+    
Sbjct: 528 VESIAGDIFQLGNTSYRILRVEAGKVRVEDAHGQPPTIPFWLGEAPGRSHELSAAVARLQ 587

Query: 566 -QLDA----------AAHERFE---GPEMRAVRPLLALQAQ----WSALPTTSTLLAET- 606
            Q+DA          AA +      G    +   +L   A+     SALP+  TL+ E  
Sbjct: 588 GQMDALLSATPGDLHAAQDWLTDTLGLNRASAEQILDYLARARLALSALPSQDTLIMERF 647

Query: 607 FKSRQGWHLFLYPFAGRMANLGLANLIAWRVSRAQPLSVSIAVNDYGFEL-LSPAQVDWA 665
           F +  G  L ++   G   N      +  R  R   + +  A ++    L LS +     
Sbjct: 648 FDASGGTQLIIHTPFGSRVNRAWGLALRKRFCRTFNVELQAAASENAIVLSLSTSHSFEL 707

Query: 666 SHLPQALGTADLLEDVLASLNAGEMALRRFREIAQIAGLVFGGYPAAQKSTRQIQ--ASS 723
             + + L +      ++ ++    +   R+R  A +A L    Y   +K   QIQ   S 
Sbjct: 708 DEVWRYLNSQSAEHILIQAVLDAPLFGVRWRWNAGVA-LALPRYTGGRKVAPQIQRMKSE 766

Query: 724 GLFYEVFRKHDA--GNL----------LLGQARDEVLSEELEIERLHRQLLKM--SELQL 769
            L   VF    A   NL          L+ Q  D+ L E ++ E     L +M   E++L
Sbjct: 767 DLIASVFPDQIACLENLAGEREVPEHPLVEQTLDDCLHEAMDSEGWLALLRRMEHGEVRL 826

Query: 770 DLQALRRPGPLAFALL 785
             + L  P P+A  +L
Sbjct: 827 ISRDLPAPSPMAAEIL 842