Pairwise Alignments

Query, 816 a.a., ATP-dependent helicase, DEAD box family from Pseudomonas putida KT2440

Subject, 1538 a.a., ATP-dependent helicase from Escherichia coli ECRC98

 Score =  221 bits (564), Expect = 2e-61
 Identities = 235/894 (26%), Positives = 388/894 (43%), Gaps = 103/894 (11%)

Query: 2   PAATDLANAWFAKRGWKPFAFQRRVWAAVERGESGLLHASTGAGKTYAVWLAAL-RAFKP 60
           PA  D    WF +   +P A Q + W    RGE  L+ A TG+GKT A +L AL R F+ 
Sbjct: 17  PATRD----WFLRAFKQPTAVQSQTWHVAARGEHALVIAPTGSGKTLAAFLYALDRLFRE 72

Query: 61  RPQGRHLA----PIQVLWVTPMRALAADTARALQAPLD----------ELQLPWSVGVRS 106
             +    A      ++L+++P++AL  D  R LQ PL           E ++   VG+R+
Sbjct: 73  GGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRT 132

Query: 107 GDTNSAERARQARRLPSVLITTPESLTLLLTRAKAREDFATLQLVVVDEWHELLGNKRGV 166
           GDT + ER++  R  P +LITTPESL L+LT ++ARE    ++ V++DE H + G+KRG 
Sbjct: 133 GDTPAQERSKLTRNPPDILITTPESLYLMLT-SRARETLRGVETVIIDEVHAVAGSKRGA 191

Query: 167 QLQLALARLRHW-HPGLPTWGLSATLGNLQHARDVLLPQGG----LLVQGRQDKALQVDT 221
            L L+L RL    H      GLSAT+   + A DV    GG     +V     +  Q+  
Sbjct: 192 HLALSLERLDALLHTSAQRIGLSATV---RSASDVAAFLGGDRPVTVVNPPAMRHPQIRI 248

Query: 222 LLPKA-----------IERFPWAGHMGL---KMLDQVCHEIDASASSLVFTNTRAQAEIW 267
           ++P A                 AG  G     +   +  E+    S++VFTN+R  AE  
Sbjct: 249 VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKL 308

Query: 268 -------YQALLEARPDWAG----------------------LIALHHASLARDTRDWVE 298
                  Y A L+  P  A                       +   HH S++++ R   E
Sbjct: 309 TARLNELYAARLQRSPSIAADAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITE 368

Query: 299 RSLKQGSLKAVICTSSLDLGVDFLPVERVLQIGSAKGIARLMQRAGRSGHAPGRRSRVTL 358
           ++LK G L+ V+ TSSL+LG+D   VE V+Q+ +   +A  +QR GR+GH  G  S+   
Sbjct: 369 QALKSGELRCVVATSSLELGIDMGAVELVIQVATPLSVASGLQRIGRAGHQIGGISKGLF 428

Query: 359 VPTHSLELVEAAAARQALLAGHIEARFSPRLCMDVLVQHLVSMALGSGFRPEQLLAEVRS 418
            P    +LV++A   + + AG +E    P   +DVL QH V+ A     + ++  + VR 
Sbjct: 429 FPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQHTVAAAAMDALQVDEWYSRVRR 488

Query: 419 TWAFRQLRDSQWQWALDFVC--HGGSSLTAYPDYQRVERQADGVYRVTSERLARRHRMGI 476
              ++ L    +   LD +   +     +A+   + V  +  G+  +T+   A+   +  
Sbjct: 489 AAPWKDLPRRVFDATLDMLSGRYPSGDFSAFRP-KLVWNRETGI--LTARPGAQLLAVTS 545

Query: 477 GTIVSDANLQLKYWSKG---GGGKTLGSVEEAFIARLRPGDTLVFAGRVLELVRVENMTA 533
           G  + D  +      +G    G + +G ++E  +   R  D +        + ++     
Sbjct: 546 GGTIPDRGMYSVLLPEGEEQAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQITRDQV 605

Query: 534 YVRRSTARKAAVARWNGGRMPLSSELADALVEQLDAAAHERF----------EGPEMRAV 583
            V  +  R A +  W G      +EL + + + L   A   F          E   +  +
Sbjct: 606 IVTPAPGRSARLPFWRGEGNGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEENTIANI 665

Query: 584 RPLLALQAQWSAL-PTTSTLLAETFKSRQG-WHLFLYPFAGRMANLGLANLIAWRVSRAQ 641
           + L+  Q   + + P +  L+ E  +   G W + L+   GR  +   A  IA R+    
Sbjct: 666 QGLIDEQRNATGIVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWALAIAGRIHALW 725

Query: 642 PLSVSIAVNDYGFELLSPAQVDWASHLPQA----LGTADLLEDVLASLNAGEMALRRFRE 697
               S+  +D G     P   D    LP A         LL+ V  ++ +  +   RFRE
Sbjct: 726 GADASVVASDDGIVARIP---DTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFAARFRE 782

Query: 698 IAQIAGLVFGGYPAAQKSTRQIQASSGLFYEVFRKHDAGNLLLGQARDEVLSEELEIERL 757
            A  A L+ G  P  +    Q +  +    E+ + +     +L   R E L +  ++  L
Sbjct: 783 CAARALLMPGRTPGHRTPLWQQRLRASQLLEIAQGYPDFPAILETLR-ECLQDVYDLPAL 841

Query: 758 HRQLLKMS--ELQLDLQALRRPGPLAFALLVEGMRETL--STEKLADRIARMVA 807
            R + +++  E+Q+       P P A +LL   + E +  S   LA+R A +++
Sbjct: 842 ERLMRRLNGGEIQISDVTTTTPSPFATSLLFGYVAEFMYQSDAPLAERRASVLS 895