Pairwise Alignments

Query, 306 a.a., glutamate / aspartate ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

Subject, 277 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 70.9 bits (172), Expect = 3e-17
 Identities = 72/263 (27%), Positives = 108/263 (41%), Gaps = 19/263 (7%)

Query: 9   LGAAIAAAVIASPAMAEELTGTLKKIKESGTITLGHRDSSIPFSYL-AGKPEPVGYSHDI 67
           L  AI +  +   A A+ L      ++++G + +   D + PF Y+     + VG  HDI
Sbjct: 11  LALAIGSFTLGGAAWADRLDD----VRKAGVLRVAAFDGNPPFGYIDPASKKQVG--HDI 64

Query: 68  QLAVVDALKKQLGTDIKVRYNLVTSQTRIPLVQNGTVDLECGSTTNNVERQQQVGFSVGI 127
            LA   A  K LG  +K+         RIPL+ +G VD+   S T   ER + V F+   
Sbjct: 65  DLATEFA--KSLG--VKIELVPTNPANRIPLLTSGKVDVVFASFTITDERAKAVDFTTPY 120

Query: 128 FEVGTRLLTKVKDGQPAYKDFPDLAGKNVVTTAGTTSERILKAMNADKQMKMNVISAKDH 187
           F VG + L K    +   KD   +    + T  GTT E  L+    D +    V+   D 
Sbjct: 121 FLVGQQFLAK----KGVLKDAAQIKDIRIGTEKGTTMESNLRKNYPDAK----VVLYDDS 172

Query: 188 GEAFNMLESGRAVAFMMDDALLAGEMAKARKPADWVITGTPQSYEIYGCMVRKDDAAFKK 247
             A   L +G   A   D   L  +         + I     S E  G  V K +A   +
Sbjct: 173 PFALAALRNGNVQAITNDGVKLTAQWNAIPDKEKYEIPPITVSKEYLGAAVPKGEARLLE 232

Query: 248 AVDDAIVAYFKSGEVNKSYEKWF 270
           A++  +V   K+G     Y+ WF
Sbjct: 233 ALNTWLVDSEKNGRALAIYDTWF 255