Pairwise Alignments

Query, 223 a.a., glutamate / aspartate ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 256 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  122 bits (306), Expect = 6e-33
 Identities = 83/228 (36%), Positives = 122/228 (53%), Gaps = 21/228 (9%)

Query: 16  WEGMVMTLKLMVMGVIGGIVLGTILALMRLSSSK----------LLSNLAGAYVNYFRSI 65
           W+G  MTL++ V+ V+ G   G  LAL RL+  +           L   A  YV++FR  
Sbjct: 24  WQGAWMTLRMTVVCVLLGSSWGLCLALARLAQPRHAPWTWVARFFLRWPATVYVSFFRGT 83

Query: 66  PLLLVITWFYLAV------PFVLRWITGEDTPV-----GAFTSCVVAFMMFEAAYFCEIV 114
           PL + I   + AV      P     I GE         GA  S VVA  +  AAY  E+ 
Sbjct: 84  PLFVQILLIHFAVMPVFIHPTSGLLIDGELARTLKQEHGALISGVVALTLNSAAYISEVF 143

Query: 115 RAGVQSISKGQMGAAQALGMNYAQTMRLIILPQAFRKMTPLLLQQSIILFQDTSLVYTVG 174
           RAG+QSIS+GQ  A ++LG + AQ MR ++LPQAFR+M P L   +I L +DTSLV  +G
Sbjct: 144 RAGIQSISRGQFDAGRSLGFSPAQVMRYVVLPQAFRRMLPPLGNNAIALLKDTSLVSAIG 203

Query: 175 LVDFLNSARSNGDIIGRSHEFLIFAGVVYFLISFSASWLVKRLQKRIS 222
           L +   +AR+      R  E  +   V+Y++++   + L++RL+ R++
Sbjct: 204 LAELAYAARTVAGAYARYWEPYLAISVIYWVMTLVLTTLLRRLEIRLA 251