Pairwise Alignments

Query, 223 a.a., glutamate / aspartate ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 265 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  122 bits (307), Expect = 5e-33
 Identities = 78/218 (35%), Positives = 117/218 (53%), Gaps = 8/218 (3%)

Query: 2   EMDFSEIIPALPALWEGMVMTLKLMVMGVIGGIVLGTILALMRLSSSKLLSNLAGAYVNY 61
           + DF  +      L  G+  TL   V+ V+ G+ +G I  L RLS +  +S    AY+  
Sbjct: 46  DWDFGVLWSYRRLLLIGLAYTLVFTVVCVVLGLAIGLITGLGRLSRNPWISAPIRAYIEV 105

Query: 62  FRSIPLLLVITWFYLAVPFVLRWITG-EDTPVGAFTSCVVAFMMFEAAYFCEIVRAGVQS 120
           FR  P+L+ + WFY A+P     +TG E + V A T C+    ++  A++ EIVR G+ S
Sbjct: 106 FRCTPVLVQLVWFYYALPV----LTGLEISAVAAATLCL---SLYGGAFYSEIVRGGIIS 158

Query: 121 ISKGQMGAAQALGMNYAQTMRLIILPQAFRKMTPLLLQQSIILFQDTSLVYTVGLVDFLN 180
           I  GQ+ AA+ALGM   Q MR I+LPQAF++M P L+ QSI+  ++TSL+  + + D L 
Sbjct: 159 IDNGQVEAARALGMTRMQLMRRIVLPQAFKRMVPPLMSQSIMQLKNTSLLSVLAVPDLLY 218

Query: 181 SARSNGDIIGRSHEFLIFAGVVYFLISFSASWLVKRLQ 218
             +       R  E   F  V YF +    +   KR++
Sbjct: 219 QGQVIAHETYRPLELYTFIAVAYFAVLLPVTIWAKRME 256