Pairwise Alignments

Query, 223 a.a., glutamate / aspartate ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 221 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  127 bits (318), Expect = 2e-34
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 6/222 (2%)

Query: 1   MEMDFSEIIPALPALWEGMVMTLKLMVMGVIGGIVLGTILALMRLSSSKLLSNLAGAYVN 60
           M++DFS ++ +   L  G+ +TL L V+  IG +VLGT L L R+  +  L      Y++
Sbjct: 1   MDLDFSPLLDSWQYLLGGLGVTLLLSVLTAIGALVLGTALGLGRVYGAAWLRIPIVFYID 60

Query: 61  YFRSIPLLLVITWFYLAVPFVLRWITGEDTPVGAFTSCVVAFMMFEAAYFCEIVRAGVQS 120
             R+IP+L+++ WFY AVP     +TG       F + ++A  +  AAY  EIVRAG++S
Sbjct: 61  TQRAIPVLVILVWFYFAVPI----LTG--ISFHPFWAALMALTLHIAAYVAEIVRAGIES 114

Query: 121 ISKGQMGAAQALGMNYAQTMRLIILPQAFRKMTPLLLQQSIILFQDTSLVYTVGLVDFLN 180
           I  GQ+ AA ALGM+ AQ +R ++LPQA  +M P       I  +DT++   + + + + 
Sbjct: 115 IRPGQIRAALALGMSRAQIVRKVVLPQALVRMLPAFGSVLSITIKDTAIATVIAVPELMK 174

Query: 181 SARSNGDIIGRSHEFLIFAGVVYFLISFSASWLVKRLQKRIS 222
            A +      R  E      V+YF+I F  + L+  L KR++
Sbjct: 175 RAETIAGQSYRPIEVFTVVMVIYFIILFPGTRLIDALYKRVA 216