Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

 Score =  236 bits (601), Expect = 1e-65
 Identities = 208/699 (29%), Positives = 307/699 (43%), Gaps = 61/699 (8%)

Query: 17  AVSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLREGMKHQ 76
           A+  WF          Q   W  I  G+S LL A TG+GKT + +L  L        +  
Sbjct: 55  ALDAWFAERGWKPFKFQRDVWKAIAQGRSGLLHATTGAGKTYAVWLGALQAFSLPRKETA 114

Query: 77  GELPAQTLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTGDTPQKE 136
              P    V++++P++AL+ D    LQ PLE +       G      +T  R+GDT   E
Sbjct: 115 RPAPPPLTVLWLTPMRALAADTLRALQQPLEAL-------GAEVHPWSTGARSGDTSSAE 167

Query: 137 RAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAHLALTLE 196
           R+A  +  P +LVTTPESL +L+  A   E L  V   +VDE H L GNKRG  + L L 
Sbjct: 168 RSAQNQRLPSVLVTTPESLSLLLARADANEVLGSVRLAVVDEWHELLGNKRGVQVQLALA 227

Query: 197 RLQALCKKPLRRIGLSATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLAIEVPP----- 251
           RL+      +   G+SAT   ++     L+G      ++  G   K+ +   + P     
Sbjct: 228 RLRRW-NPGMTVWGMSATLGNLKEAMHALLGHEE--GVLVQGQVPKKLVIDSLLPGRAER 284

Query: 252 VPLGAVMAIDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDRLGKEA--VAAH 309
            P G  + + +   V + +A      +TTLVF NTR  +E   + L +   + A  +A H
Sbjct: 285 FPWGGHLGLTMLPQVIEEIAA----SKTTLVFTNTRSQSEIWYQALLEARPEWAGSIALH 340

Query: 310 HGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGSIAAFLQRVGR 369
           HGSL + +R   E  LKSG+L+ +V T+SL+LG+D   ++ V Q+ SP  +A  LQR GR
Sbjct: 341 HGSLDREVREWVELGLKSGELKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGR 400

Query: 370 AGHQVDGVPKGRLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLDVLAQQIVAEASNQ 429
           +GH      +  L PT   +++E  A    + +G ++A H P  PLDVL Q +V  A   
Sbjct: 401 SGHAPGRPSRITLVPTHSIEMVEGAAARAAIAEGHIEARHSPDQPLDVLVQHLVTVALGG 460

Query: 430 AWHEQELLDCLRQATPYAELDQHHYQALLRMLAEG---YNGRQGVRSAYLHRDAVSGTLR 486
            +   +L   +R    Y  L +  +Q  L  +++G    +     R A    + V     
Sbjct: 461 GFLPDDLYAEVRGTAAYENLSRESWQWCLDFVSQGGPSLSAYPDYRRAVPDAEGVWRVPD 520

Query: 487 GRRGSQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGNASYRIL 546
            R   +     + GTI  +A  +V     A  IGSV E F      GD F  G     ++
Sbjct: 521 ARLARR--HRMNIGTIVSDASMSVQFVGGA-KIGSVEESFVARMKPGDCFLFGGRLLELV 577

Query: 547 RVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAGGDTVEVLA 606
           R+      V  A G  P +P W G     S+ L+ AV R       QLALAG    +   
Sbjct: 578 RIHDMTAWVRRASGKRPAVPRWNGGRMPLSNTLADAVVR-------QLALAGDGAYD--- 627

Query: 607 WLQATFELDEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLII-----HSP 661
                   +  C   LL+     ++   ALP+  TL+ E      G    +      H  
Sbjct: 628 ------SPELQCVRPLLE----IQQQWSALPTPHTLLAETLATREGSHLFLYPFAGRHVH 677

Query: 662 YGSRINRAWGLALRKRFCRTFN-------FELQAAASED 693
            G     AW +A  +   RTF+       FEL +A   D
Sbjct: 678 LGLASLLAWRVAQHE--ARTFSIAVNDYGFELLSATEVD 714