Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 489 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Variovorax sp. SCN45

 Score = 67.8 bits (164), Expect = 2e-15
 Identities = 94/372 (25%), Positives = 153/372 (41%), Gaps = 49/372 (13%)

Query: 11  LELFHPAVSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLR 70
           L L  P         + T+T  Q QA P++ +GQ ++ AA TG+GKT +  L +L  +L+
Sbjct: 8   LSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLLQRMLK 67

Query: 71  EGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRT- 129
              ++    PA+       P++AL       +  P   ++  +A+Q     + T    T 
Sbjct: 68  H--ENASTSPAR------HPVRAL-------VLLPTRELADQVAQQIKLYAKYTNLRSTV 112

Query: 130 --GDTPQKERAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKR 187
             G    K +    K    +LV TP  L  L    +    L  V  V++DE    A    
Sbjct: 113 VFGGIDMKPQTLELKKGVEVLVATPGRL--LDHIEAKNAVLNQVEYVVLDE----ADRML 166

Query: 188 GAHLALTLERLQALCKKPLRRIGLSATQRP-VERVAQFLVGSGRPCAIVDIGHARKRDLA 246
                  L+R+ +   K    +  SAT  P ++R+A   +               +  + 
Sbjct: 167 DIGFLPDLQRILSYLPKQRTTLLFSATFSPEIKRLASSYL---------------QNPIT 211

Query: 247 IEVP-PVPLGAVMAIDVWGLVYD----RLATLAREHRTT--LVFVNTRRLAERITRHLSD 299
           IEV  P    + +    + +  D     L  + R+   T   VFVN++    R+ R L +
Sbjct: 212 IEVARPNETASTVEQHFYSVSDDDKRRALKQIVRQRGITQAFVFVNSKLGCARLARSL-E 270

Query: 300 RLGKEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPGS 359
           R G    A H G  S+  RL A    K+G++ +LV T     G+DI D+  V     P +
Sbjct: 271 RDGLRTTALH-GDKSQDERLKALASFKAGEVDLLVCTDVAARGLDIKDVPAVFNFDIPFN 329

Query: 360 IAAFLQRVGRAG 371
              ++ R+GR G
Sbjct: 330 AEDYVHRIGRTG 341