Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 1457 a.a., Uncharacterized ATP-dependent DNA helicase PA3272 from Variovorax sp. SCN45

 Score = 1698 bits (4397), Expect = 0.0
 Identities = 884/1445 (61%), Positives = 1076/1445 (74%), Gaps = 35/1445 (2%)

Query: 11   LELFHPAVSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLR 70
            L  FHPAV+ WF R F + T AQA+AWP I AG+  L+AAPTGSGKTL+AFLA LDEL+R
Sbjct: 3    LHSFHPAVARWFLRTFPSPTSAQAEAWPAIRAGRDTLVAAPTGSGKTLTAFLAALDELVR 62

Query: 71   EGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRITTAVRTG 130
             G++  G LP +T V+YVSPLKALSNDIRLNL APL GI   +A  GL    I TAVRTG
Sbjct: 63   RGLE-PGGLPDETAVVYVSPLKALSNDIRLNLDAPLAGIRAELAALGLPDVDIRTAVRTG 121

Query: 131  DTPQKERAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNKRGAH 190
            DTPQ+ER    +  PH+LVTTPESLYVL+GS SGR  L  V +VIVDEIHA+A +KRG+H
Sbjct: 122  DTPQRERQQSLRRPPHVLVTTPESLYVLLGSTSGRRMLGTVRSVIVDEIHAVAASKRGSH 181

Query: 191  LALTLERLQALCK-----KPLRRIGLSATQRPVERVAQFLVGSGR-------PCAIVDIG 238
            LAL+LERLQA C      +P+R IGLSATQ+P++ VA+FLVG+G         CA+VDIG
Sbjct: 182  LALSLERLQARCLAHSGVRPVR-IGLSATQKPIDEVARFLVGAGALRADGTADCAVVDIG 240

Query: 239  HARKRDLAIEVPPVPLGAVMAIDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLS 298
            +A++RDLA+E+PP PL AVM+   W  VY R+A L   H+TTLVFVNTRR+AER  RHL 
Sbjct: 241  YAKQRDLALELPPTPLEAVMSGGQWTQVYARVAELVWLHKTTLVFVNTRRMAERTARHLG 300

Query: 299  DRLGKEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVASPG 358
            D LGKEAVAAHHGSLSK  RLDAEQRLK G L+VLVATASLELG+DIGD+D+VCQ+ SP 
Sbjct: 301  DILGKEAVAAHHGSLSKETRLDAEQRLKRGALKVLVATASLELGLDIGDVDMVCQIGSPR 360

Query: 359  SIAAFLQRVGRAGHQVDGVPKGRLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLDVL 418
            +IA FLQR GR+GH V GVPK RLFP SRD+L+EC ALLDC+R+GELDAL I  APLDVL
Sbjct: 361  AIATFLQRAGRSGHAVGGVPKARLFPQSRDELVECAALLDCIRRGELDALRILPAPLDVL 420

Query: 419  AQQIVAEASNQAWHEQELLDCLRQATPYAELDQHHYQALLRMLAEGYNGRQGVRSAYLHR 478
            AQQIVAE + + W+E+EL   +R+A PYA+L +  Y  ++RM++EG+   QG R+ ++HR
Sbjct: 421  AQQIVAETACREWNEEELFTLVRRAWPYAQLTRKSYMDVVRMVSEGFATPQGQRAGHVHR 480

Query: 479  DAVSGTLRGRRGSQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQL 538
            DAV+  LR R+G+++TALTSGGTIP+  DY V+LEPQA  IG+VNEDFA+ES+AGD+FQL
Sbjct: 481  DAVNHLLRERKGARMTALTSGGTIPETGDYTVVLEPQADKIGTVNEDFAIESLAGDVFQL 540

Query: 539  GNASYRILRVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLALAG 598
            GN SYRIL++EPGRVRVEDAHG+ P IPFWLGEAPGRSDELS  V+RL+A + Q L   G
Sbjct: 541  GNTSYRILKIEPGRVRVEDAHGVAPNIPFWLGEAPGRSDELSHGVSRLRAEVAQALEAGG 600

Query: 599  GDTVEVLAWLQATFELDEACAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLII 658
             D    +  L  TF LDE  A Q++++LA    VLG LP+Q TL++ERFFD SGG QL+I
Sbjct: 601  RDA--AMRLLTQTFGLDEEAARQIVEHLAHAHAVLGTLPTQRTLILERFFDASGGMQLVI 658

Query: 659  HSPYGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRS 718
            HSP+GSR+NRAWGLALRKRFCRTFNFELQAAA+EDAIVLSLSTSHSF LDEV RYL+S S
Sbjct: 659  HSPFGSRLNRAWGLALRKRFCRTFNFELQAAATEDAIVLSLSTSHSFPLDEVARYLHSSS 718

Query: 719  AEPILIQALLDAPLFGVRWRWNAGVAMALPRFVGGRKVAPQIQRMKSEDLVAAVFPDQIA 778
            A  +L+QALLDAPLF VRWRWNA  A+ALPRF GGRKVAPQ+QRM+SEDL+AAVFPDQ+A
Sbjct: 719  ALHVLVQALLDAPLFNVRWRWNATTALALPRFSGGRKVAPQLQRMRSEDLLAAVFPDQVA 778

Query: 779  CLENIAGERQIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLA 838
            C ENI GER +P+HPLV QTLDDCLH+AMD++GWL+LLRRMESG VR++ RDLPAPSPLA
Sbjct: 779  CAENIVGERDVPEHPLVAQTLDDCLHDAMDADGWLSLLRRMESGEVRVIARDLPAPSPLA 838

Query: 839  SAILNARPYAFLDDAPLEERRTQAVLNRRWNDVHSSDDLGALDADAIAAVAAEAWPQPAN 898
               L+ARPYAFLDDAPLEERRTQAV NRR+ D  S+DD+G LDADAIA+V  EAWPQP +
Sbjct: 839  MEALSARPYAFLDDAPLEERRTQAVQNRRYTDPESADDIGQLDADAIASVREEAWPQPRS 898

Query: 899  PDEMHEALMSLGAIGQVEVDANPCWDLLLRQLAKAGRALRLPDD-------KLWLARERL 951
             DEMHEAL  LGA+   E      W   L  LAKAGRA RL  +        LW+  ERL
Sbjct: 899  ADEMHEALGMLGALSDDEAACQGDWKPWLATLAKAGRATRLLCEGKGRAARGLWVTAERL 958

Query: 952  NLLLALYPTAHREPALERLAGFDQPIEPDHALSELLRARLSGHGPQTLAQIAAPLGKPVT 1011
             LL A+ P A  +PA+   A  +QP + + AL ELLR+RL G GP T+ Q+AAPL     
Sbjct: 959  RLLQAVAPDAPIQPAITPPADVEQPTDREAALRELLRSRLGGLGPVTVEQLAAPLFLQPA 1018

Query: 1012 DIEQALARLEAEGYVLRGHFSPGATDLQWCERHLLARIHRYTVKRLRREIEPVSLQDFMR 1071
            D+E+AL  L+ EG VL+G F+PGA DL+WCERHLLARIHRYT+KRLRREIEPV  +DFMR
Sbjct: 1019 DVERALLALQTEGSVLQGRFTPGAADLEWCERHLLARIHRYTLKRLRREIEPVEPRDFMR 1078

Query: 1072 FLFDWQHLAPDERLRGPQAVAEVLGQLQGFPSAAAAWEAELLPARIKDYSPHWLDEACRS 1131
            FLF WQH+    R+RGP+A++ +L QL+G+ + A  WE+ELLPAR+ DY+  WLD+ C +
Sbjct: 1079 FLFAWQHIGAAARVRGPEALSGILSQLEGYEAPAPLWESELLPARVADYAGAWLDDLCTA 1138

Query: 1132 GQFAWSRLAAT-------VASSTLTSTPLVLLPRDQLNTWRSLAPAPAVDA-LGLRAQRV 1183
            G+  W+RL            S +L +TP+VLLPR     W +LAP P  D  LG RA RV
Sbjct: 1139 GRVLWTRLRPNATEGRKGAGSVSLRATPVVLLPRRSAALWTTLAPPPVDDEHLGSRAARV 1198

Query: 1184 HEALKTQGALFFDELAHEAHLLPSELETALQELVGSGLARADSFTGLRSLITPATKRSSR 1243
               L   GA FFDE+A    LLP E+E AL ELV  G AR DS+ GLR+L+ PA+KR+S 
Sbjct: 1199 AAHLAQHGACFFDEIAAGTRLLPVEIEEALTELVARGRARCDSYAGLRALLVPASKRASA 1258

Query: 1244 NSRRGHPPLSSSMAHAGRWALLRRSDA----PPDHDQRLEHIARTLLRRYGVICWRLLAR 1299
            ++RR        +  AGRW L+R   A         + +E + R LLRRYGVICWRLL R
Sbjct: 1259 DARRRRRAPLFGIEDAGRWTLVRPPAATEAMAASSAEAIEQVVRVLLRRYGVICWRLLER 1318

Query: 1300 ESDVLPPWRELLRCYHRLEARGEIRGGRFIAGLAGEQFALPEAVVLLRQVRRREPDGTLQ 1359
            E+  L PWR+L+R   RLE+RGEIRGGRFIAG++GEQFALPEAV  +RQ+RR+   G L 
Sbjct: 1319 EAAWLAPWRDLVRVCRRLESRGEIRGGRFIAGVSGEQFALPEAVASMRQLRRQPGSGELV 1378

Query: 1360 VVSAGDPLNLIGSLLPGAKVPAVIGNRLLYRDGIPVAVRMAGRYAYLVEASAQEQESWRQ 1419
             ++A DP NL+G+L+PGAK P V G+R+ Y DG+PVA  +AG    LV   A +++S  +
Sbjct: 1379 ALAASDPANLLGTLMPGAKAPRVPGSRVAYLDGVPVATSVAGEVTMLVALDAAQKQSALR 1438

Query: 1420 KLLRD 1424
             L  D
Sbjct: 1439 ALSLD 1443