Pairwise Alignments

Query, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

Subject, 443 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score = 85.5 bits (210), Expect = 1e-20
 Identities = 115/433 (26%), Positives = 174/433 (40%), Gaps = 67/433 (15%)

Query: 11  LELFHPAVSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAVLDELLR 70
           L L  P + T  +  + T T  QA+A P + AG+ ++ AA TG+GKT    L VL  L  
Sbjct: 6   LGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLAL 65

Query: 71  EGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQAP----LEGISQAIAEQGLNAPRITTA 126
           EG                   K  SN IR  +  P     E +   + E   N P  T A
Sbjct: 66  EGE------------------KVASNSIRALVLVPTRELAEQVHNNVREYAENLPLTTYA 107

Query: 127 VRTGDTPQKERAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAGNK 186
           V  G +   +   +R+    +LV TP  L  L    + +     V T+++DE    A   
Sbjct: 108 VYGGVSINPQMMRLRR-GVDLLVATPGRLLDLFRQNAVK--FNQVQTLVLDE----ADRM 160

Query: 187 RGAHLALTLERLQALCKKPLRRIGLSATQRPVERVAQFLVGSGRPCAIVDIGHARKRDLA 246
                A  L+ + A   +  + +  SAT     R+                G A    L+
Sbjct: 161 LDLGFAEELQSVYAALPRKRQTLLFSATFSDQIRML--------------AGLALNDPLS 206

Query: 247 IEVPPVPLGAVMAIDVWGLVYDR------LATLAREHR--TTLVFVNTRRLAERITRHLS 298
           IEV P    A  ++  W +  D+         L R+ R    LVF  TR   ++    L 
Sbjct: 207 IEVSPRNATAA-SVKQWLVPVDKKRKADLFCHLLRKQRWKQVLVFAKTRNGVDQ----LV 261

Query: 299 DRLGKEAVAAH--HGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVAS 356
           +RL  E V A   HG   +A R  A    K+ ++QVLVAT     G+DI D+ LV  +  
Sbjct: 262 ERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVATDVAARGLDIDDLPLVVNLDL 321

Query: 357 PGSIAAFLQRVGRAGHQVDGVPKGRLFPTSRDDLIECVALLDCV------RQGELDALHI 410
           P     ++ R+GR G   +   KG        D ++ +A ++ +      R  E D +  
Sbjct: 322 PIVAEDYVHRIGRTGRAGN---KGEAISLVCADEVQLLAAIEVLTRQTLPRHEEPDFIPE 378

Query: 411 PRAPLDVLAQQIV 423
            R P+   + Q++
Sbjct: 379 HRVPMTDASGQVI 391